rs232860052 SNP Detail

Summary

• ID
  rs232860052
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr15:3307092 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AAACATATTT TCAAGATTCA
  TATTGATGCT TTTATCTAGA AAGCCTTTCA AAACAAACAA ACCATGACTG GAGAGATGGC
  TCAGTGGTTA AGAATACTTG CTGCATTTGC AGAGAAGCCC CATTTAGTCC CCAGCACCCA
  CACAGCAGCT TAGAGCCATT TAATTCCAGT TCCAGGGGAC CCAGTGCCCT CTTCTGGCCT
  R
  AGGGTACCAG GCACAAATGC AGTGCTCTCA ATACATGGAG CCAAGGGACT CATATACATG
  AAGTAAAAAT AAATAAACAT CTAAAGGTAA TAAAAAACTA TCGTAGACCA CTATGTCAGC
  TACTAATGAA TGCTGTTGCA TAAGGATAAG TGCTCGAAGA ATTTAGTCAA CATTTAAAAT
  ATTCTGACTG TGGTAACCTG                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss392857613	MGP_WTSI_15_3227610	EVA_MGPV3	EVA_MGPV3	f	SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	G	A	A	A	A
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs232860052					SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	G	A	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss392857613	MGP_WTSI_15_3227610	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr15:3307092 () rs orientation: forward

Symbol	Name	Function Class
Rr498565	regulatory region 498565	within coordinates
Selenop	selenoprotein P	within coordinates
Tssr4538	transcription start site region 4538	1647 bp upstream
Tssr130392	transcription start site region 130392	1945 bp downstream
Tssr130393	transcription start site region 130393	1907 bp downstream
Tssr130394	transcription start site region 130394	1881 bp downstream
Tssr130395	transcription start site region 130395	415 bp downstream
Tssr130396	transcription start site region 130396	378 bp downstream
Tssr130397	transcription start site region 130397	1511 bp upstream
Tssr130398	transcription start site region 130398	1547 bp upstream
Tssr130399	transcription start site region 130399	1655 bp upstream
Tssr130400	transcription start site region 130400	1675 bp upstream
Tssr130401	transcription start site region 130401	1689 bp upstream
Tssr130402	transcription start site region 130402	1757 bp upstream
Tssr130403	transcription start site region 130403	1789 bp upstream
Tssr130404	transcription start site region 130404	1829 bp upstream
Tssr130405	transcription start site region 130405	1849 bp upstream
Tssr130406	transcription start site region 130406	1880 bp upstream
Tssr130407	transcription start site region 130407	1914 bp upstream
Tssr130408	transcription start site region 130408	1950 bp upstream
Tssr130409	transcription start site region 130409	1959 bp upstream
Tssr130410	transcription start site region 130410	1980 bp upstream
Tssr133562	transcription start site region 133562	1841 bp upstream
Tssr133563	transcription start site region 133563	1579 bp downstream
Tssr133564	transcription start site region 133564	1651 bp downstream
Tssr133565	transcription start site region 133565	1699 bp downstream
Tssr133566	transcription start site region 133566	1705 bp downstream
Tssr133567	transcription start site region 133567	1952 bp downstream