rs232860538 SNP Detail

Summary

• ID
  rs232860538
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:123258321 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGTTGAAGGG GTTTGCAACC
  CCATAGGAAG AACAATATCA ACCAAACAGA CCCTCCAGAA CTCTCAGGGT CTAAGCCATC
  AACAAAGGAG TACACATGGC TCCAGCTGCA TGTGTAGCAG AGGATGGCCT TGTCATGCAT
  CAGTGGGAGG AGAGTTCCTT GGTCCTATGA GGTTCGATAG ATGCCCCAGT GTAGGGGAAT
  Y
  GAGGGCCAGG AGGTGGGAGT GGGTAGGTGG GTGAAGGAAC ACCCTCATAG AAGCAGGGGG
  AACAGGGATG TGATAGGGTT TTTCTGGGAG GGAGGGAAAG CTGGAAAGGG GATAACATTT
  GAAATGTAAA TAAAGAAAAT CTCCAATTAA CAAAAAAGTA GTAAAGTGAC TAGTCTTCAA
  AATGTTTGGG CCATATGAAT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss369922346	MGP_WTSI_6_123231380	EVA_MGPV3	EVA_MGPV3	f	SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	C	T	T	C	T
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs232860538					SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	C	T	T	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss369922346	MGP_WTSI_6_123231380	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:123258321 () rs orientation: forward

Symbol	Name	Function Class
Clec4e	C-type lectin domain family 4, member e	427 bp downstream
Tssr58808	transcription start site region 58808	1368 bp upstream
Tssr63019	transcription start site region 63019	166 bp downstream
Tssr63020	transcription start site region 63020	1131 bp downstream
Tssr63021	transcription start site region 63021	1217 bp downstream
Tssr63022	transcription start site region 63022	1252 bp downstream
Tssr63023	transcription start site region 63023	1280 bp downstream
Tssr63024	transcription start site region 63024	1383 bp downstream
Tssr63025	transcription start site region 63025	1436 bp downstream
Tssr63026	transcription start site region 63026	1447 bp downstream
Tssr63027	transcription start site region 63027	1496 bp downstream
Tssr63028	transcription start site region 63028	1509 bp downstream
Tssr63029	transcription start site region 63029	1540 bp downstream
Tssr63030	transcription start site region 63030	1570 bp downstream
Tssr63031	transcription start site region 63031	1627 bp downstream
Tssr63032	transcription start site region 63032	1651 bp downstream
Tssr63033	transcription start site region 63033	1676 bp downstream
Tssr63034	transcription start site region 63034	1695 bp downstream
Tssr63035	transcription start site region 63035	1716 bp downstream
Tssr63036	transcription start site region 63036	1770 bp downstream
Tssr63037	transcription start site region 63037	1800 bp downstream
Tssr63038	transcription start site region 63038	1837 bp downstream
Tssr63039	transcription start site region 63039	1896 bp downstream
Tssr63040	transcription start site region 63040	1954 bp downstream