rs232860658 SNP Detail

Summary

• ID
  rs232860658
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr14:66205826 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TACGCCATCT TCTATGTTTC
  TGTTACTCTC CCATTAAAAT GGGAGCAAAG AAAAGGAGTG AACGATGTGG AAGGATGTGG
  AAGATGAACA TGCAATAAGG TGGGCGTCGG GCGGTGGAAT CCTGTGCCAG TTCTGGGCTG
  GAAGCAGGCC AGTGTAGTGT GTGGATTCCT TGTCCTCTAA GACTCTTCTG TTGGGGCCTG
  R
  TTGAGAGGTT TTTGGTAGCT CTCAGGGATT AGAGCCACCA ATTTAGGGGC CCTACAGCAA
  CCAATGCGGT CATTTGTGAT GCCCATGCGC CCCCTGGTGC CCCCCGCTGG GTGCTGCGCC
  TCTTACCCCC ACCTCTAGGC TTCCAGAAAG CTCCTGGTGC ATTCTCCGGC ATTCTCTGGG
  CGTGAGTCAC GCAGGTTTGC                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss391367266	MGP_WTSI_14_66587214	EVA_MGPV3	EVA_MGPV3	f	SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	G	A	A	A	A
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs232860658					SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	G	A	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss391367266	MGP_WTSI_14_66587214	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr14:66205826 () rs orientation: forward

Symbol	Name	Function Class
Clu	clusterin	267 bp upstream
Cpgi6638	CpG island 6638	91 bp proximal
Rr290025	regulatory region 290025	within coordinates
Rr297400	regulatory region 297400	within coordinates
Tssr126237	transcription start site region 126237	114 bp upstream
Tssr126238	transcription start site region 126238	134 bp upstream
Tssr126239	transcription start site region 126239	156 bp upstream
Tssr126240	transcription start site region 126240	167 bp upstream
Tssr126241	transcription start site region 126241	184 bp upstream
Tssr126242	transcription start site region 126242	217 bp upstream
Tssr126243	transcription start site region 126243	226 bp upstream
Tssr126244	transcription start site region 126244	236 bp upstream
Tssr126245	transcription start site region 126245	256 bp upstream
Tssr126246	transcription start site region 126246	274 bp upstream
Tssr126247	transcription start site region 126247	1337 bp upstream
Tssr126248	transcription start site region 126248	1364 bp upstream
Tssr126249	transcription start site region 126249	1424 bp upstream