rs232883336 SNP Detail

Summary

• ID
  rs232883336
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:6482158 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGATGATGTC TGTTACCTTG
  GATTCAGTGA GATCGTCACG AACGAAGCAA ACATGTCTGT AGTCATCTGT ACATTAAGTG
  CTTGCATTTG GGGAGTTAAC TGGTGGTAGC TTTGTGTGGC TCTAAACCCA GCCCTGGGGA
  CCAGAGACAG CCAAACCTCC AGAGTGCTTG TCCAGCTAGC CTAGCTGAGT CCAGAGCCTC
  Y
  TATCTGGTGA GAGACCCTGT GTGGAGTCGG TAAGAATGAG CACAATAGAA AAGACACATG
  GTGTCCTGCT CTGGTGAGCA CACGTGCATT TATGGGTGCA TGTCCATGCA CAGTCATGTG
  CGTGCATCAC ACACACACTA CACACAGAAA TAAAGACATT AGTTATACCT CAGTAAAGCT
  TCTTCAAAAA GAAGTCTGTT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss320211082	CHEV_2_6398393	CHEVERUD	SCREENING_POP	f	SNP	T	C
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs232883336					SNP	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:6482158 () rs orientation: forward

Symbol	Name	Function Class
Cpgi11178	CpG island 11178	1035 bp proximal
Gm13391	predicted gene 13391	within coordinates
Gm52546	predicted gene, 52546	within coordinates
Rr551409	regulatory region 551409	843 bp proximal
Rr551410	regulatory region 551410	1102 bp proximal