rs232888745 SNP Detail

Summary

• ID
  rs232888745
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr18:10787388 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TCAAATTGAA TCAACATTAG
  TCATATAATT TAGAATGTAA TATATCAATT ATATCGATAT GTAGAGAAAG TTAAGTAATG
  GGAAGGTTGC TACAGTGGCA AAGAGAATGT ACCTAGGGTT TTTGTTAGAT GAAATGATTT
  ACAAGAGGGG AAAAGTTGCA GAGGATGTTA ATTTTGTAAT CTAAGATTTA AAAAAACAAA
  M
  AAACAAACAA AAAACCACTG CAAGCAAAAC CCTAAACACA CCTCACATTC TCCCAATTAG
  CTGCAAGCAT TCACCCAGTT TCCTGTGCCC ACCAGACCAT ACTGGGTTCT TCTGGTGCCT
  CAGGAAATAT TCTGCATCTT TCTTGCTTTG GGATTCTTTT GGAGGAGCAG GAGTTTGAGT
  TTCCAGGGTT AGTGGTAGAT                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss399687799	MGP_WTSI_18_10787386	EVA_MGPV3	EVA_MGPV3	f	SNP	A	A	A	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	A	C	C	C	C	C	C	C	A	C	A	C	A	C	A	C	C	C	C	C	C	A	C	C	A	C	C	C	C	C	C	C	A
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs232888745					SNP	A	A	A	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	A	C	C	C	C	C	C	C	A	C	A	C	A	C	A	C	C	C	C	C	C	A	C	C	A	C	C	C	C	C	C	C	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss399687799	MGP_WTSI_18_10787386	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr18:10787388 () rs orientation: forward

Symbol	Name	Function Class
Gm58661	predicted gene, 58661	1900 bp upstream
Mib1	MIB E3 ubiquitin protein ligase 1	within coordinates
Mir1a-2	microRNA 1a-2	1836 bp upstream
Mir1b	microRNA 1b	1821 bp downstream
Mir133a-1hg	Mir133a-1, Mir1b and Mir1a-2 host gene	within coordinates
Mirc18	microRNA cluster 18, including Mir1b through Mir1a-2	1821 bp distal
Rr533801	regulatory region 533801	1911 bp distal
Rr533802	regulatory region 533802	1546 bp distal
Rr533803	regulatory region 533803	865 bp distal
Rr533804	regulatory region 533804	35 bp proximal
Rr533805	regulatory region 533805	295 bp proximal
Tssr152437	transcription start site region 152437	1906 bp upstream
Tssr152438	transcription start site region 152438	296 bp downstream