rs232891341 SNP Detail

Summary

• ID
  rs232891341
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr7:109720315 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                    AATCTACAT TAAAAAACAT CAAGCTTTCT
  ACTGATGGCC TCAGTTCCCC AAAAGTGGGT TCTAATTTCC TAGTGAAAAA GAAACCTACT
  TTTCTGTATG ACAGTCTGGC CTCAGTAATT CCCACTCCAG CAGAGAATGC TAAAAAAAAA
  M
  AAAACAAAAC CGTAACAAGG AGAAATGATT GATCATAGCA TACAAAATAG GAACACACTT
  GTTGTAAACA GATTTAAGTT ACGGTTGAGA AGGTTGTGGA AACTTATTTT TTCCTGGAAA
  ttatgagaca ggaccactac agagcaaagg                                 
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss322394503	CHEV_7_117264622	CHEVERUD	SCREENING_POP	f	SNP	A	C
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs232891341					SNP	A	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:109720315 () rs orientation: forward

Symbol	Name	Function Class
Cpgi19571	CpG island 19571	315 bp proximal
D7Wsu130e	DNA segment, Chr 7, Wayne State University 130, expressed	1091 bp distal
Gm45819	predicted gene 45819	within coordinates
Rr400541	regulatory region 400541	664 bp upstream
Rr653190	regulatory region 653190	448 bp proximal
Tssr68487	transcription start site region 68487	925 bp upstream
Tssr68488	transcription start site region 68488	1145 bp upstream
Tssr68489	transcription start site region 68489	1191 bp upstream
Tssr68490	transcription start site region 68490	1399 bp upstream
Tssr68491	transcription start site region 68491	1611 bp upstream
Tssr74248	transcription start site region 74248	776 bp upstream
Tssr74249	transcription start site region 74249	471 bp downstream
Tssr74250	transcription start site region 74250	1782 bp downstream
Tssr74251	transcription start site region 74251	1811 bp downstream
Tssr74252	transcription start site region 74252	1893 bp downstream
Wee1	WEE 1 homolog 1 (S. pombe)	951 bp upstream