rs232903183 SNP Detail

Summary

• ID
  rs232903183
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr10:62486904 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTCGCCCCCG GTCCTGACAG
  GTCTTTCCCC TTCCTAGACA GCTCCCCTCC CCGCCCAGGC CAGCGCAGCC CGAGGGAGGC
  GCGGCCCAGC CGCAGCACAC CTTTTGCCGC TCCTTCCTCT GGCTCTCGGA CTCTTCCAAG
  GGTGCCTCGA GCTCCATTAT GTCTCCCCAG AGGAGTTTCC CGGGCATTAC TGGCCGTCGC
  M
  ACCTCCCGCC CGGCTGCGGT GGCCGCGACC ACCTACGGCC ACCGAGAGCG TGAAAGGAAG
  CGGGGGCTGG GCGGCCCCGC CGGCCAGGAC CGTGCGTCAC TTCCGGGCCA CGCACCTCGC
  GGCGGGAGCA AAGCAAGCCG GAACTCTACA GGAGGAAACT CTCCCAGAGA GTCGCAGCCT
  CCCTCGGCCA ATGAAAACCT                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss380622842	MGP_WTSI_10_62113873	EVA_MGPV3	EVA_MGPV3	f	SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	C	A	A	A	A
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs232903183					SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	C	A	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss380622842	MGP_WTSI_10_62113873	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr10:62486904 () rs orientation: forward

Symbol	Name	Function Class
Cpgi1632	CpG island 1632	within coordinates
Ddx50	DExD box helicase 50	within coordinates
Gm66017	predicted gene, 66017	530 bp upstream
Rr369004	regulatory region 369004	251 bp upstream
Rr432661	regulatory region 432661	within coordinates
Rr432662	regulatory region 432662	83 bp proximal
Rr432663	regulatory region 432663	541 bp proximal
Tssr93725	transcription start site region 93725	541 bp upstream
Tssr93726	transcription start site region 93726	562 bp upstream
Tssr93727	transcription start site region 93727	587 bp upstream
Tssr97868	transcription start site region 97868	45 bp downstream
Tssr97869	transcription start site region 97869	69 bp downstream