rs232906555 SNP Detail

Summary

• ID
  rs232906555
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr13:24242591 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTGAGCCTCC TGCTCCACCC
  CCTAAATCAT GGGATTTCAG GTGTACACGC CCATGCCTGG CTTAGGAAAT ACTTTGACAG
  AATCTATTTC GCCAATGAGA GAATGTCAAG AACACAGTGA TATTGTACAC TATTTTTCCT
  CTGGATTTGA ACTTATTTAA AATGAACTCA AGATTTATAG CCAAGCTACA GTGAAAAGTT
  K
  GGTAAATGTC CTATGGAACA TACTTCCCAT ATATTTCCAA GGGTATTGGT TTATAGCAAA
  ACATGAGCAG CTTGGTGCAC ATGGATGCAG TTTCTTTTGT TCCCAGAAAA GTCCTTTATT
  GAATCTCCGA AACTTAGGAT TTCCATATCA AGTAACCACT CATGGGGCAT CGGCTCCTTT
  AGCTCTTTGG GTGAGGCCAC                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss324294187	CHEV_13_24150477	CHEVERUD	SCREENING_POP	f	SNP	T	G
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs232906555					SNP	T	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr13:24242591 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
4933427I18Rik	RIKEN cDNA 4933427I18 gene			817 bp upstream
Carmil1	capping protein regulator and myosin 1 linker 1			Intron
				Noncoding-Transcript-Variant
D13Ertd224e	DNA segment, Chr 13, ERATO Doi 224, expressed			498 bp distal
Tssr121764	transcription start site region 121764			681 bp downstream
Tssr121765	transcription start site region 121765			712 bp downstream