rs232908020 SNP Detail

Summary

• ID
  rs232908020
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:43444046 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ATATAACCAG TGGGGTAAAG
  TGAAAGGACA GAATACAAGA AGGAGAAAGA AAAATAGGAG CGATGAACAG AACCAGGCCT
  CAGGTGCAGA GTCTGCACGC ACTACAATAA TTGCTCAAAG ACTTACCAAA TCCATGGCAG
  CAAGACTGTG ACCTGTCTGT CTTTATTTTT CTCTTCAAAC CTAGTCAACA TGGGGATATG
  K
  CGTTCTCTCC TGCAGAGCAG AACAAATTTT CTAAATTTCT AGTGACACAA GACACGAGAT
  GATGGAAAAT GAATAGACAT ATTACAAGCT TTAGATTTTT TGATCCAATT CAAATGAGAA
  TTTTGTAGTT TATGAGTTTA ACAGTGGTCA GTAAAGTATC TCCAAGTCGC CTCATGGCAT
  CTATTGTCCT CTTCTAGAAG                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss320267192	CHEV_2_43409554	CHEVERUD	SCREENING_POP	f	SNP	G	T
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs232908020					SNP	G	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:43444046 () rs orientation: forward

Symbol	Name	Function Class
Kynu	kynureninase	1295 bp upstream
Rr556278	regulatory region 556278	554 bp proximal
Rr556279	regulatory region 556279	1003 bp proximal
Rr556280	regulatory region 556280	1331 bp proximal
Tssr17589	transcription start site region 17589	1287 bp upstream
Tssr17590	transcription start site region 17590	1311 bp upstream
Tssr17591	transcription start site region 17591	1328 bp upstream