rs232921729 SNP Detail

Summary

• ID
  rs232921729
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr16:49675560 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTTCTCCTTC GTGGTTTTAA
  ACTGCTCATT ATGCATGGAA CTTGATTGCC CAACCCTGCT TGGGGGATGA AAACATTAGC
  CAACAAAGAA AGAAAAACAG ATAAGGAGGT CCACTTCTGG AACAAGTCAG ACCGGGGAGA
  GATCAGGGCC AGGGGGAGCC AGAGGGAAGG AGTTCCTCGG GGGCCAGGAC CTGGTCACAG
  M
  GCCCTCTCTC CGCCCAGCCC TGCGGCTCCA GGGCTGCGCG CCTTGGGAGG GAAGATGGTG
  AAAGCAGAAG CAGCGCCTAC ACCGGGAGAG CAGGGAGGAG GAGTTGGACT GAGGTTGGGC
  GGCTCCGAGG TCCAGGGCGA GCTTGGCCAG AGGGAGTAGA GAGCAGCGGG GCTGCGCAGG
  GACGCGTGCC GTGAGTTCCG                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss396238730	MGP_WTSI_16_49855310	EVA_MGPV3	EVA_MGPV3	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	A	C
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs232921729					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	A	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss396238730	MGP_WTSI_16_49855310	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr16:49675560 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Cd47	CD47 antigen (Rh-related antigen, integrin-associated signal transducer)			Intron
				mRNA-UTR
				Noncoding-Transcript-Variant
Cpgi8307	CpG island 8307			within coordinates
Gm4633	predicted gene 4633			151 bp upstream
Gm56621	predicted gene, 56621			within coordinates
Gm60685	predicted gene, 60685			1040 bp upstream
Rr370104	regulatory region 370104			847 bp upstream
Rr516740	regulatory region 516740			1748 bp distal
Rr516741	regulatory region 516741			689 bp distal
Rr516742	regulatory region 516742			within coordinates
Rr516743	regulatory region 516743			180 bp proximal
Rr516744	regulatory region 516744			294 bp proximal
Rr516745	regulatory region 516745			964 bp proximal
Tssr4899	transcription start site region 4899			81 bp downstream
Tssr4900	transcription start site region 4900			63 bp upstream
Tssr4901	transcription start site region 4901			173 bp upstream
Tssr4902	transcription start site region 4902			288 bp upstream
Tssr4903	transcription start site region 4903			570 bp upstream
Tssr138724	transcription start site region 138724			838 bp downstream
Tssr138725	transcription start site region 138725			653 bp downstream
Tssr138726	transcription start site region 138726			97 bp downstream
Tssr138727	transcription start site region 138727			67 bp downstream
Tssr138728	transcription start site region 138728			152 bp upstream
Tssr138729	transcription start site region 138729			427 bp upstream
Tssr138730	transcription start site region 138730			548 bp upstream
Tssr138731	transcription start site region 138731			875 bp upstream
Tssr138732	transcription start site region 138732			1021 bp upstream
Tssr138733	transcription start site region 138733			1109 bp upstream
Tssr138734	transcription start site region 138734			1361 bp upstream
Tssr138735	transcription start site region 138735			1399 bp upstream
Tssr141348	transcription start site region 141348			100 bp downstream
Tssr141349	transcription start site region 141349			320 bp downstream
Tssr141350	transcription start site region 141350			635 bp downstream
Tssr141351	transcription start site region 141351			919 bp downstream
Tssr141352	transcription start site region 141352			1150 bp downstream