rs232958133 SNP Detail

Summary

• ID
  rs232958133
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:74540369 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GAACACTGGC TACAAGAGAA
  AAGCCTTCTG AGTGACAACA CCGGAGCCAC AGACAAAAAG AGGGTGTGGT GGTTCCTCCC
  TTTTAGAGAA AAGTCGGTTC TAGGATTCCA TTTTCCGAGT CCTATTGCTT GCCTCTGCAC
  AGCAGACAAA CAGCACAACA TGGCTGCCTC TCTCTGCAGT CTCTCCCCAT CCCTCATTTC
  Y
  CCCAGGCTGA AAGGGCATGG GATAAGCTCT GCTTTTATTT GGATAGAGGG CAGATGATAC
  AGAGGCAAAT TGAGATTAAT TTTTAGAATG TTTTAGAATT GAACAATCTC TTTACCCACT
  TCTATGTGTA TCGACCAGGG AATAAGCACC AGCTTGCCCA TTTCCTTGTG TAATAACATA
  TTGTTTAATT CACTGCATAA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss354485072	MGP_WTSI_2_74548082	EVA_MGPV3	EVA_MGPV3	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs232958133					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss354485072	MGP_WTSI_2_74548082	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:74540369 () rs orientation: forward

Symbol	Name	Function Class
Cpgi11801	CpG island 11801	1714 bp proximal
Gm38462	predicted gene, 38462	within coordinates
Hoxd3	homeobox D3	1968 bp upstream
Hoxd3os1	homeobox D3, opposite strand 1	19 bp downstream
Igs15	intergenic site 15	within coordinates
Rr559369	regulatory region 559369	1922 bp distal
Rr559370	regulatory region 559370	887 bp distal
Rr559371	regulatory region 559371	within coordinates
Rr559372	regulatory region 559372	1412 bp proximal
Rr559373	regulatory region 559373	1913 bp proximal
Tssr18431	transcription start site region 18431	311 bp downstream
Tssr18432	transcription start site region 18432	1833 bp upstream
Tssr18433	transcription start site region 18433	1863 bp upstream
Tssr18434	transcription start site region 18434	1886 bp upstream
Tssr18435	transcription start site region 18435	1933 bp upstream