rs232964629 SNP Detail

Summary

• ID
  rs232964629
• Variation Type
  SNP
• Alleles
  T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:84767473 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTGGGATATT TTTCATAGTG
  ACCAAGTAGC CGTGAGACCT TGGGGCAAGT TCAGAAAACC TTCGGAAGTT TTTGTTTTTG
  CCGCACTGAA GAGTTCCCGC TGTAGACCGA ACATTTATTT GTCAGGCCTT CGAATGGCTC
  AGGGTGGCTG CTCCTCTGGT GGACTGTATT CAGGCTTTCA AGTCGGGGGT TCTGGGGGGG
  T
  GGGAGGGGAG CTCCTACCTC TGCTTGTGAT GTCCCCAAAC ATTAGGCAGG ATGTGTGTGT
  GTGTGTGTGT TTTTTTTCCT ATGTGGCATG TGTTGCCATT GAGACCTGCC TTATCTTCTT
  ACCCATGGGT AGTTTCGCGG GTTCTGTGAA TGAAAGGATG TATGGACGGT ATTTTGGCGG
  GGGGTGGGTG TTGGGGGTGC                                            
  
  T = T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S5/SvEvBrd	BALB/cByJ	BALB/cJ	C57BL/6J	CE/J	CZECHII/EiJ	FVB/NJ	I/LnJ	MA/MyJ	NON/ShiLtJ	NZO/HlLtJ	RIIIS/J	SWR/J
ss354689949	MGP_WTSI_2_84777286	EVA_MGPV3	EVA_MGPV3	f	SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S5/SvEvBrd	BALB/cByJ	BALB/cJ	C57BL/6J	CE/J	CZECHII/EiJ	FVB/NJ	I/LnJ	MA/MyJ	NON/ShiLtJ	NZO/HlLtJ	RIIIS/J	SWR/J
rs232964629					SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss354689949	MGP_WTSI_2_84777286	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:84767473 () rs orientation: forward

Symbol	Name	Function Class
Cpgi11876	CpG island 11876	264 bp distal
Rr57133	regulatory region 57133	1472 bp distal
Rr57134	regulatory region 57134	within coordinates
Rr397102	regulatory region 397102	1486 bp upstream
Rr397103	regulatory region 397103	1799 bp upstream
Slc43a3	solute carrier family 43, member 3	within coordinates
Tssr554	transcription start site region 554	121 bp upstream
Tssr18709	transcription start site region 18709	523 bp downstream
Tssr18710	transcription start site region 18710	417 bp downstream
Tssr18711	transcription start site region 18711	240 bp upstream
Tssr18712	transcription start site region 18712	485 bp upstream
Tssr18713	transcription start site region 18713	523 bp upstream
Tssr25061	transcription start site region 25061	1287 bp downstream