rs232965099 SNP Detail

Summary

• ID
  rs232965099
• Variation Type
  SNP
• Alleles
  C

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr7:7281367 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGGAACCACG GCTGGCCTTC
  GGGTCCCAGA TCCGTCCCCA CGAGGCAGAG AACCGGGGGT GCACTTGCGC GTTTTTCGCC
  ACCGGGTGGC CCCGGAGATC GGCGCTGGGC CCTAGACGCA CTACAGCTCC CATGAGCGCC
  TGGGCCCGAC TTCCTGTCCA AAATGGAGGC ACTTCCTGTA TCTCACAAAG TACAACCTCC
  C
  GGGGATTGAC CGATGGAAAA CGCGACCGCC TCGCGGGGTC GGATCCACCA GCCTGGCCGG
  CTTCCCCTCA CCCTGGCCGG GATGAAGCAG GCACATCCGA CCCCTTGGAG GAAGTTTTTT
  CCGGCGTGCT CTCTGTCGCC ACCTGGTGGT GACAGAGAAG AATGCGGTCA TCGTGACCGT
  TCGATTTTCC TTTTTTCAAA                                            
  
  C = C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S5/SvEvBrd	A/J	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CZECHII/EiJ	DBA/1J	FVB/NJ	I/LnJ	JF1/MsJ	LEWES/EiJ	MOLF/EiJ	NON/ShiLtJ	NZO/HlLtJ	NZW/LacJ	PL/J	QSi3/Ianm	RF/J	SEA/GnJ	ST/bJ	ZALENDE/EiJ
ss370610671	MGP_WTSI_7_7231079	EVA_MGPV3	EVA_MGPV3	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S5/SvEvBrd	A/J	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CZECHII/EiJ	DBA/1J	FVB/NJ	I/LnJ	JF1/MsJ	LEWES/EiJ	MOLF/EiJ	NON/ShiLtJ	NZO/HlLtJ	NZW/LacJ	PL/J	QSi3/Ianm	RF/J	SEA/GnJ	ST/bJ	ZALENDE/EiJ
rs232965099					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss370610671	MGP_WTSI_7_7231079	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:7281367 () rs orientation: forward

Symbol	Name	Function Class
Cpgi18306	CpG island 18306	within coordinates
Gm45844	predicted gene 45844	79 bp upstream
Rr642334	regulatory region 642334	182 bp distal
Rr642335	regulatory region 642335	within coordinates
Rr642336	regulatory region 642336	107 bp distal
Rr642337	regulatory region 642337	133 bp proximal
Tssr64464	transcription start site region 64464	368 bp downstream
Tssr70610	transcription start site region 70610	323 bp upstream
Tssr70611	transcription start site region 70611	282 bp upstream