rs232967392 SNP Detail

Summary

• ID
  rs232967392
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr10:60236771 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                    GGGGGCACT GGGTGGCCAT GCTCCCCGAT
  TTCCCACAGT TTCAGGGAGG GCCTTGTTGG GATAGAGCCT CCCCTGTGGC CTGGCTTTGG
  TGTTAGAACC CGAGGGAGAT ACAAAATCAG CTGGGGAAGT GGAAGCTCTT CTCTCCCTGC
  Y
  TCAGGTCCAG TATTTGAAAA TTCATTTTGA AACCTTTGGA ATCAAGTTTG CCTGGCATTT
  TGTAATATCT GTTTCTCCTC TGTGCTCCAA ACAATGTTGC ACTGGTTGCC AATGAGACGG
  CAGGAATGTT TGTCTTTAAA AAAAAAAAAA                                 
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss323325387	CHEV_10_59863740	CHEVERUD	SCREENING_POP	f	SNP	T	C
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs232967392					SNP	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr10:60236771 () rs orientation: forward

Symbol	Name	Function Class
Cdh23	cadherin related 23 (otocadherin)	within coordinates
Gm17455	predicted gene, 17455	within coordinates
Rr228097	regulatory region 228097	within coordinates
Tssr93633	transcription start site region 93633	1220 bp downstream
Tssr93634	transcription start site region 93634	1187 bp downstream
Tssr93635	transcription start site region 93635	1116 bp downstream
Tssr93636	transcription start site region 93636	228 bp downstream