rs232968106 SNP Detail

Summary

• ID
  rs232968106
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr7:19307438 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GCCTGTCCCT GCAGGCGCTG
  CTCCTACACC CGCGCCGCCG CCACCGCCGC CGCCCAGGGC CGGGCAGGCG CCGAGCCCCG
  ACTGCCTAGT TTCCGCCCGC GCAACCTCAG CAGAGGTCCG GATGGGCACA GAGTCCGGAG
  CTCCTGAGTT CCGCCCCCGC CCCGCGCCTC CACTTTCCCC ACATGTTCAT CGGCCTCTCC
  R
  GGGCACGCGA CCAGGGCTGG TCTCTGCCAT CCTGTGGGTT AGGGACATTT AAGATGCCCA
  CTTTGGGGAG CACGAGACAG AGGTTCAGAA AGTTGGGCAT GGTGGCTCCC AGGCTTGGAA
  TCCCCGGCGC CCTCGGGAGG TGAGACAAGA GAATAGTCAA AGTTCAAGCG AGGCCTGACA
  ACCTGTGAAA AGGGGCATGG                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss370752251	MGP_WTSI_7_20158862	EVA_MGPV3	EVA_MGPV3	f	SNP	G	A	A	A	A	A	G	A	G	G	A	A	A	A	A	A	A	G	G	A	G	A	A	A	A	G	A	A	G	A	G	G	A	G	A	G	A	G	A	A	G	A	A	G	A	G	A	A	A	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs232968106					SNP	G	A	A	A	A	A	G	A	G	G	A	A	A	A	A	A	A	G	G	A	G	A	A	A	A	G	A	A	G	A	G	G	A	G	A	G	A	G	A	A	G	A	A	G	A	G	A	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss370752251	MGP_WTSI_7_20158862	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:19307438 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Cpgi18500	CpG island 18500			within coordinates
Gemin7	gem nuclear organelle associated protein 7			Intron
				mRNA-UTR
Rr380485	regulatory region 380485			within coordinates
Rr643193	regulatory region 643193			556 bp distal
Rr643194	regulatory region 643194			within coordinates
Rr643195	regulatory region 643195			124 bp proximal
Tssr70933	transcription start site region 70933			150 bp upstream
Tssr70934	transcription start site region 70934			136 bp upstream
Tssr70935	transcription start site region 70935			110 bp upstream
Tssr70936	transcription start site region 70936			280 bp downstream