rs232976291 SNP Detail

Summary

• ID
  rs232976291
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:164300756 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        GCAGG CAAGGTCATG GCGTGATTTC
  R
  GAAGCTGTGC TTTCTTCTCA TTGGA                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss320605963	CHEV_2_164284336	CHEVERUD	SCREENING_POP	f	SNP	A	G
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs232976291					SNP	A	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:164300756 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Cpgi12661	CpG island 12661			1957 bp proximal
Gm14302	predicted gene 14302			1058 bp downstream
Rr367360	regulatory region 367360			1824 bp upstream
Rr397476	regulatory region 397476			1710 bp downstream
Rr569623	regulatory region 569623			1850 bp distal
Rr569624	regulatory region 569624			within coordinates
Rr569625	regulatory region 569625			1629 bp distal
Rr569626	regulatory region 569626			1567 bp proximal
Rr569627	regulatory region 569627			1949 bp proximal
Sys1	SYS1 Golgi-localized integral membrane protein homolog (S. cerevisiae)			Intron
				Noncoding-Transcript-Variant
Tssr21592	transcription start site region 21592			1848 bp downstream