rs232984607 SNP Detail

Summary

• ID
  rs232984607
• Variation Type
  SNP
• Alleles
  G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:103910989 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ATCAATCATC AGCTTCAAAG
  AAGCTCCATG AAGGGTTTAG CTTTTCCAGG AGCTTTGGTT CGTAGTATTG AAAGATCTCA
  AATATGATTT CTTATTTAAC ATCAGAGAGT GTGGCAGGGT CTGAAGGGAA AAGAGGGGAC
  TTCAGAAGGC ATGGAAAGGC AAGGAAATTT GTTTTAATTT GAGAAAGGAA ATGAGTCAGG
  G
  AGTGGGGGGG AAATCTAGAG GGAGAAGGGA AGTATGGAAG AAATGCAGCT GAGGTGCAGT
  CACTAGGTGG GTGGGAAGTG TGCTCCTTGC CCTCTGAGCT CTTGAAAACT GCCATTCTCC
  TGGAATCCAC ATAACCTAGA AAGAATTCAG CAGGAGGGGG AGGAAGTAAG GGAGGGCAAA
  GGAAGAATAT GAATGTGCTT                                            
  
  G = G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZW/LacJ	PWK/PhJ	RF/J	SEA/GnJ	SM/J	SPRET/EiJ	SWR/J	WSB/EiJ
ss355105915	MGP_WTSI_2_103920801	EVA_MGPV3	EVA_MGPV3	f	SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZW/LacJ	PWK/PhJ	RF/J	SEA/GnJ	SM/J	SPRET/EiJ	SWR/J	WSB/EiJ
rs232984607					SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss355105915	MGP_WTSI_2_103920801	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:103910989 () rs orientation: forward

Symbol	Name	Function Class
Cd59b	CD59b antigen	Intron
Rr562020	regulatory region 562020	1520 bp distal
Rr562021	regulatory region 562021	885 bp proximal
Rr562022	regulatory region 562022	1907 bp proximal