rs232994444 SNP Detail

Summary

• ID
  rs232994444
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr11:58736199 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGAACTGCAT CTTCATTCAC
  TAGTGTCTTA GTCAGGGTTT CCATGACTGT GAAGAGACAC CAGGACCATG GCAATGCTTT
  TAGAGGAAAA CATTTCATTG AGGCTCATTT ACACTTTTCA GAGGTTTAGT CCATTATCAT
  CATGGTGGAA AGCATGGCGG CATGCAGGTA GACATGGTGC TGGAGAAGAA GCTGAGCATT
  Y
  TCCATCTTGC TCCTCAGACA GGAAAAGGAG ACTGCCACAC TAGGCCTAGC TTGAGCATAG
  GAGACCACAA AGCCCATCTC CACAGTGACA TACTTCCTCC AACAAGGTCA CACCTACTCT
  AATAAGGACC CAAGAGTGCC ACTCCCCATG GCCAAGCATT CACACACACT AGTCGATGTG
  CGCCATTCCT GTTCATACCA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C58/J	CBA/J	FVB/NJ	JF1/MsJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWK/PhJ	RIIIS/J	SEA/GnJ	ST/bJ
ss383530032	MGP_WTSI_11_58658875	EVA_MGPV3	EVA_MGPV3	f	SNP	T	T	C	T	T	T	T	T	T	T	T	T	T	T	T	C	T	T	T	T	C
SNP Consensus Information
SNP					Consensus Type	A/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C58/J	CBA/J	FVB/NJ	JF1/MsJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWK/PhJ	RIIIS/J	SEA/GnJ	ST/bJ
rs232994444					SNP	T	T	C	T	T	T	T	T	T	T	T	T	T	T	T	C	T	T	T	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss383530032	MGP_WTSI_11_58658875	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:58736199 () rs orientation: forward

Symbol	Name	Function Class
Cpgi2935	CpG island 2935	1656 bp proximal
Gm12258	predicted gene 12258	1785 bp upstream
Rr246822	regulatory region 246822	1401 bp proximal
Rr402593	regulatory region 402593	1518 bp upstream
Tssr101753	transcription start site region 101753	1780 bp upstream