rs232997910 SNP Detail

Summary

• ID
  rs232997910
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr15:84740220 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CCCGGGCACA GAGAGACACG
  AGTTCCCTCC TGCAGCGCCG ATAGGAAAGG AGGCTGACGA GAGGGAAGAA AGGCGAGCTG
  GCGCCCAACT CTTCCGGCTG CCGCTAAGTT GCGCCGGGTG CCCGGGCTGC CTGCGCCGCC
  CGGCGCATGG CCCCCAGGCG CCGGGAGCCC CGCGCAGCCC CCCAGCGCGC GCCCTGTCGC
  S
  GCCCGCGCCA GCTGACCGCC GGCAGGGACT ATATTTCCTC CGGCGCGCGC GCCTGGATCT
  CGCTGGGGCC GCGGCAAAGT TGTGCCTCGG CACGATGCTA ATTCGGCAGT GCCCGGATGG
  AGCGGGCCGG GGCGGCAGGA GGCGGTGCCG GGAACCCGCT GCCCGCCCCG CCCCGCCCCG
  CCCGGCCCGC GCGTGCGCAT                                            
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10SnJ	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LG/J	LP/J	MA/MyJ	NOD/ShiLtJ	NON/ShiLtJ	NZO/HlLtJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss394794288	MGP_WTSI_15_84686449	EVA_MGPV3	EVA_MGPV3	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	G	C	C	C	C	C	C	C	C	C	C	C	C	G	C	C	C	C	C	C	C	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10SnJ	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LG/J	LP/J	MA/MyJ	NOD/ShiLtJ	NON/ShiLtJ	NZO/HlLtJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs232997910					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	G	C	C	C	C	C	C	C	C	C	C	C	C	G	C	C	C	C	C	C	C	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss394794288	MGP_WTSI_15_84686449	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr15:84740220 () rs orientation: forward

Symbol	Name	Function Class
Cpgi7469	CpG island 7469	within coordinates
Phf21b	PHD finger protein 21B	within coordinates
Rr507072	regulatory region 507072	1615 bp distal
Rr507073	regulatory region 507073	419 bp distal
Rr507074	regulatory region 507074	20 bp proximal
Rr507075	regulatory region 507075	1547 bp proximal
Tssr135727	transcription start site region 135727	935 bp upstream
Tssr135728	transcription start site region 135728	892 bp upstream
Tssr135729	transcription start site region 135729	874 bp upstream
Tssr135730	transcription start site region 135730	831 bp upstream
Tssr135731	transcription start site region 135731	1 bp downstream
Tssr135732	transcription start site region 135732	24 bp downstream
Tssr135733	transcription start site region 135733	46 bp downstream
Tssr135734	transcription start site region 135734	76 bp downstream
Tssr135735	transcription start site region 135735	93 bp downstream
Tssr135736	transcription start site region 135736	522 bp downstream