rs233000176 SNP Detail

Summary

• ID
  rs233000176
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr16:90851341 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GGCAAGTGAT AAGATCAGGG
  ATAGAGGGAA CAAAGATGCT TAAACAGATG CAGAGGAGAG GAAAGGGAAG AGCCAAAGAG
  CCTTGTGGTC TGCTCTGTGA CTGCTCTGTG AAAGTGAAGA GAGACCAGAA AAGGACTTCC
  CCACACAACA ATGCTGTGTG TGTAAATTTG AGGCTAACAG TCTGGGCAAA TGTCTTCATT
  Y
  GTGCACCCCT CTCTTGGAAC CCTGACACCT TCCGGGAGAG TTAAGGTCCC ACACAACCTT
  CCCAAGTCCA TAAACACACT TTTAAACTCC AGTCTCTCAA TGCATTTGTT CTTCATAACT
  ATCTGGAAAA TATCCGTCTA GAGGAATTTA GGTCCCCAAA CTTAAGAAAT GTGTCATTTT
  TGAATGGGAA TTCCAGACCA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss325276941	CHEV_16_91054698	CHEVERUD	SCREENING_POP	f	SNP	C	T
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs233000176					SNP	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr16:90851341 () rs orientation: forward

Symbol	Name	Function Class
4931406G06Rik	RIKEN cDNA 4931406G06 gene	within coordinates
Epcip	exosomal polycystin 1 interacting protein	within coordinates
Gm60345	predicted gene, 60345	within coordinates
Rr322308	regulatory region 322308	541 bp distal
Rr322309	regulatory region 322309	60 bp proximal
Rr328102	regulatory region 328102	461 bp proximal
Tssr4953	transcription start site region 4953	1972 bp downstream
Tssr142065	transcription start site region 142065	1957 bp downstream
Tssr142066	transcription start site region 142066	1988 bp downstream