rs233006012 SNP Detail

Summary

• ID
  rs233006012
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr7:24336389 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CACAGCCAAA AGCAGTTCAG
  CTGTCTCTGC CCCGGGCAGA GGGACTGTAA GGAAGTTATC CCACACTGAG TAGGCAACTG
  AGAGGGGCAC CCCCTCCCCC ACTCTAAGAT AGGGGCTGGG ATCCCCTCCC TCGGGCAAAG
  GCAGCCAGGA GAGGGGAAAG CTCCAATGCA GGCGCAAGGG GTAGAAGGAA AAGGGTCAGT
  R
  TGTCCTGCAC CCTGAAACTT GTGGGAGGGC TTCTAATGCT GTTCTGGATG CACACTAGAA
  TCATCTCACC CCGGGACAGA GGCCACTGGG AAAGACGTTG TCTTTGTGGG GAGAAGGCTT
  TAACAAAGAA CCCTGGGTTC TACCCGGTCC TCACCCGCAG GAGCGCAAGC CCTGGAGTGC
  TACAGCTGCG TGCAGAAGGC                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss370789620	MGP_WTSI_7_25421983	EVA_MGPV3	EVA_MGPV3	f	SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	G	A	A	A	A
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs233006012					SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	G	A	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss370789620	MGP_WTSI_7_25421983	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:24336389 () rs orientation: forward

Symbol	Name	Function Class
Cpgi18554	CpG island 18554	107 bp proximal
Cpgi18555	CpG island 18555	1373 bp proximal
Gm26550	predicted gene, 26550	within coordinates
Lypd3	Ly6/Plaur domain containing 3	within coordinates
Rr167239	regulatory region 167239	within coordinates
Rr170151	regulatory region 170151	1789 bp distal
Tssr2135	transcription start site region 2135	350 bp downstream
Tssr65017	transcription start site region 65017	444 bp downstream
Tssr65018	transcription start site region 65018	400 bp downstream
Tssr65019	transcription start site region 65019	375 bp downstream
Tssr65020	transcription start site region 65020	1812 bp upstream
Tssr65021	transcription start site region 65021	1820 bp upstream