rs233009404 SNP Detail

Summary

• ID
  rs233009404
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr16:16889626 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GACAGACAGA CAGTTGAATC
  AATGCCAGTA ATCAATCTGA ATAGAAGTCT TTTCTTTTCC TGTTTTTTTT TTTGTTTGTT
  TGTTTTTGTT TTTTTTTTTA CTTATGCATT TTCGGCAAGT GCTCTACCAC AACCACAGCT
  CCAACTTTAT AAATAAACTT AATTTTATAA AAGAGCTGGG GGTGTGGCTG GGTGGTAGGG
  Y
  TCAGCATGTG TGAGGCCCTT GGTCTCCCCC CCACTAGACA CGCAAATCAG AAGTTCCCCC
  TCAGCTCTGG CGGACCCAGC TCAGCCACCC TTCATTGCTG GGGTACACCT GGTCACACTG
  AGTACCTCAG GGGATCTGTT CTTAAATCCC AGGTTGTCCT TGCATTCTAA AGAACCGAAG
  TTGTTTGTTT GGCACTCTGT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss395512732	MGP_WTSI_16_17071855	EVA_MGPV3	EVA_MGPV3	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs233009404					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss395512732	MGP_WTSI_16_17071855	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr16:16889626 () rs orientation: forward

Symbol	Name	Function Class
Cpgi8003	CpG island 8003	1267 bp distal
Gm59807	predicted gene, 59807	1722 bp upstream
Rr324980	regulatory region 324980	225 bp distal
Tssr137265	transcription start site region 137265	1547 bp downstream
Tssr137266	transcription start site region 137266	1523 bp downstream
Tssr137267	transcription start site region 137267	1508 bp downstream
Tssr137268	transcription start site region 137268	1487 bp downstream
Tssr137269	transcription start site region 137269	1442 bp downstream
Tssr137270	transcription start site region 137270	1426 bp downstream
Tssr137271	transcription start site region 137271	1417 bp downstream
Ypel1	yippee like 1	within coordinates