rs233012220 SNP Detail

Summary

• ID
  rs233012220
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:68942488 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                    ATATAGTTT TTCTAAGTTT CGAACGTGGT
  AATTCCTTTG TTCTCTCTCT ATTCTGGGAA CTGACCACTC AGAGTGCAAA GGTGAATACA
  ACAGAGCAAA TATCCTTAGG AGACTCTCAA TATAGTAaca cacacacaca cacacacaca
  S
  acacacacac acacacacac acacacTGGG AGGAGTGGGA AAGAAAGGTG GGAAGGGAGG
  GAGGAGAGAT GACAAATATC TAGAATCTAA TTCAGGAAGG GCCAAGGAGA TACCAGGATC
  TGTGGGAAGA CAGACTAGGA CCAGAAGAGA                                 
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss322997350	CHEV_9_68883013	CHEVERUD	SCREENING_POP	f	SNP	C	G
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs233012220					SNP	C	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:68942488 () rs orientation: forward

Symbol	Name	Function Class
Rora	RAR-related orphan receptor alpha	within coordinates
Rr682107	regulatory region 682107	284 bp distal
Tssr90367	transcription start site region 90367	907 bp upstream
Tssr90368	transcription start site region 90368	856 bp upstream
Tssr90369	transcription start site region 90369	738 bp upstream