rs233012631 SNP Detail

Summary

• ID
  rs233012631
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr8:85415638 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CAAGGCAAGC TAAGATAACT
  CTCACATCCC GGATCTCCAT ATTTTCCTGA TGCATACATT AGGCCAACAC TCAGTCTGAG
  TGGCTCCTTT GCACACTTCC CAGGCATTCG GTTATTTAAT CTTTGCCCTT GACAGCTAAG
  ATTCCTATTT AACAGGTAAG GGAAATAGGA GCCTTACATT TTAATTAACT TGCCCAGAGT
  R
  CGTGGTGGGA CTGAGATTCA AAGACAGTGA ATACTATTCT AGAGCCTGAG TTAACCTACA
  AGGTGCACAC AGAAGACATC TAAAGGTGCA GAGTGCCTCC GCTTTTTGCC CTGAATTAAA
  CTAGTGAAAC TCCCTTGTAG AAGAGTTGTA TTATTAAGAA TCACTGGTGT AGTGTAGCCT
  GCGCACTTCC TTCCCTAGAA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss375404317	MGP_WTSI_8_87212908	EVA_MGPV3	EVA_MGPV3	f	SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	G	A	A	A	A
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs233012631					SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	G	A	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss375404317	MGP_WTSI_8_87212908	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr8:85415638 () rs orientation: forward

Symbol	Name	Function Class
Cpgi20705	CpG island 20705	973 bp distal
Cpgi20706	CpG island 20706	472 bp proximal
Nacc1	nucleus accumbens associated 1, BEN and BTB (POZ) domain containing	1110 bp upstream
Rr666573	regulatory region 666573	1118 bp distal
Rr666574	regulatory region 666574	1746 bp distal
Rr666575	regulatory region 666575	774 bp distal
Rr666576	regulatory region 666576	within coordinates
Rr666577	regulatory region 666577	213 bp proximal
Rr666578	regulatory region 666578	783 bp proximal
Trmt1	tRNA methyltransferase 1	within coordinates
Tssr78430	transcription start site region 78430	260 bp upstream
Tssr78431	transcription start site region 78431	299 bp upstream
Tssr82111	transcription start site region 82111	1910 bp upstream
Tssr82112	transcription start site region 82112	1438 bp upstream
Tssr82113	transcription start site region 82113	1390 bp upstream
Tssr82114	transcription start site region 82114	1125 bp upstream
Tssr82115	transcription start site region 82115	1099 bp upstream