rs233016668 SNP Detail

Summary

• ID
  rs233016668
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr8:13438966 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GAAGGTGCAG TCCACTCGGG
  GAGCTGTGTT GTTGCTGGGG AGGAACTTGA CAATCTAGGA GAAAGGGTGC CATGTGCCCT
  TGAGGTGCAG GCAGACATTC ACACACAATT CTGAGCCATT ACCCATGGTA CCACAGTGTA
  GGAGGGCAGC TGGCAGTGGT AGAGCTGAGA TAGAGGGTCC TAGTCACTGG CACCACACCC
  R
  TGCCTGCTGT GGTGATTAGC AGCCTTCCTT GCTGCAGAAC AGGTCTACCT ACTGCTCTCA
  GTGGGGTCCC CACATTCTCA CATCCCTTCC TAGACTTCTT GAGCCTCAGT CATTGTCTCC
  TGAGCTCTGT GCAGGACCTG CCTTTGGCAG GAGTGGCAAC TGGGGCATGG ACCCGTGGAG
  CTCTGATCAC CACCTGCTTG                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss322506485	CHEV_8_13388966	CHEVERUD	SCREENING_POP	f	SNP	A	G
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs233016668					SNP	A	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr8:13438966 () rs orientation: forward

Symbol	Name	Function Class
Atp4b	ATPase, H+/K+ exchanging, beta polypeptide	Intron
Rr659923	regulatory region 659923	1882 bp proximal
Tssr80440	transcription start site region 80440	1472 bp upstream
Tssr80441	transcription start site region 80441	151 bp upstream
Tssr80442	transcription start site region 80442	727 bp downstream
Tssr80443	transcription start site region 80443	893 bp downstream
Tssr80444	transcription start site region 80444	1133 bp downstream