rs233035700 SNP Detail

Summary

• ID
  rs233035700
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:82906539 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGAACAAAAA GAGAAGAAAT
  AAGAAAAATA TAACGCAGCT AACCAACAGG ATGATTGTAA ATGTATCATC TTCCCAAATA
  AATTAAATGA AAAGTATATA AGTCAATGCT GCCCAATAGA AACACAAGCA AACAAGGTTC
  TGGTAGCAAT GTTTTTTGGT TTGTGTGTTT GTTTTTTGTT TTTTGTTTCT TAAATAGATA
  Y
  ATAAAGAAAA AGCTTTTAAT TGGGGGCTTG CACACACACA TACACACACA CAGGGAGGGA
  GAGAGAGAGA GAGAGAGAGA GAGAGAGAGA GAGAGAGAGA GGTGGGTGGG GGATGTCAAG
  ACCACACTTA ATAATTCTTC TAATCATTTC AAACAGTTCC AGTCTTTGGT GGCTAAGCAC
  TCAAATATGT GAGCCTAAGG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss378269655	MGP_WTSI_9_82918093	EVA_MGPV3	EVA_MGPV3	f	SNP	T	T	T	T	C	T	T	T	T	T	T	T	T	T	T	C	C	C	T	C	T	C	T	T	T	C	C	T	T	T	T	T	C	T	T	T	T	C	C	C	C	C	C	T	T	T	T	T	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs233035700					SNP	T	T	T	T	C	T	T	T	T	T	T	T	T	T	T	C	C	C	T	C	T	C	T	T	T	C	C	T	T	T	T	T	C	T	T	T	T	C	C	C	C	C	C	T	T	T	T	T	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss378269655	MGP_WTSI_9_82918093	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:82906539 () rs orientation: forward

Symbol	Name	Function Class
Gm39383	predicted gene, 39383	within coordinates
Gm57057	predicted gene, 57057	470 bp upstream
Rr401561	regulatory region 401561	563 bp downstream
Rr683838	regulatory region 683838	506 bp distal
Rr683839	regulatory region 683839	361 bp distal
Tssr90739	transcription start site region 90739	479 bp upstream