rs233043354 SNP Detail

Summary

• ID
  rs233043354
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr18:69724810 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GATTGACAAC TAACTGTTCT
  AATGAGGAAA AAATCCTCAA AGCATGAAAT TTGAATGAAA TGTGTGATTA TAATTCAAGT
  ACTGTTTACA CAAACCTCTG GGGACCTTCC GAATAAATGC AGAGCAAGTG AGTTAGACAA
  ACCTCTGGGC CCTGTGGTCT GTGTGTGTGT GTGTGTGTGT GTGTGTGTGT TAGTGTGGGG
  R
  AAACTTTCCA CCCTTAGCTA AGCCTCTACT CTTCAGTCCA CTCCAGCCTT CCGTTGTCTA
  TTAATACTGT ATGTGTTTTG TTACCGCGTT GAGTCGTAAG GAAATAGGTG CTTTGCATTA
  TTAAAGTTGA TTCTGAAGAG TAGATGTGTG CTCAGTGGCA TTTGCCTCGG CATATGCAAA
  TGATTTAGTT TCATTTGGGA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss325671393	CHEV_18_69751393	CHEVERUD	SCREENING_POP	f	SNP	G	A
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs233043354					SNP	G	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr18:69724810 () rs orientation: forward

Symbol	Name	Function Class
Cpgi10192	CpG island 10192	610 bp proximal
Cpgi10193	CpG island 10193	1479 bp proximal
Rr405727	regulatory region 405727	1528 bp upstream
Tcf4	transcription factor 4	within coordinates
Tssr151833	transcription start site region 151833	1062 bp upstream
Tssr151834	transcription start site region 151834	1205 bp upstream
Tssr151835	transcription start site region 151835	1215 bp upstream
Tssr151836	transcription start site region 151836	1245 bp upstream
Tssr151837	transcription start site region 151837	1471 bp upstream
Tssr151838	transcription start site region 151838	1519 bp upstream
Tssr151839	transcription start site region 151839	1622 bp upstream
Tssr151840	transcription start site region 151840	1715 bp upstream
Tssr151841	transcription start site region 151841	1752 bp upstream
Tssr151842	transcription start site region 151842	1775 bp upstream
Tssr151843	transcription start site region 151843	1807 bp upstream
Tssr151844	transcription start site region 151844	1844 bp upstream
Tssr151845	transcription start site region 151845	1885 bp upstream
Tssr153821	transcription start site region 153821	1553 bp downstream