rs233049683 SNP Detail

Summary

• ID
  rs233049683
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr7:126575262 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AATGTCCTAG TGTGCCATAC
  TGGCTCTCCT GATTCCTTCT TGGAGGCGGT GACCCCAGAG TTATATCAAG GCATTTAGGA
  GATGGAAAGG CGTTAGGGTG GAACTTGGGC TCTAATCCTC CCACCACCAG GGCGGCGCTA
  GAAGCAAGCG GCAGGCATGC TCGGAGCCTC TCTAGCCACC TCTTCCCAGC CTGGGTCCCG
  K
  AGAGCGACGA GGATCGCAAG CGTCGCGGGC GGGGAAGCGA TGTGGGCTGT ACTAAGTCAC
  CCAATCTCTT GGGGAGGCGC AGACTCGGGA CGGAGTAATC TCTACGCCTT ACGGTTGCCT
  CCAGGAGTTT ACGCCCTCTG TGAAATGCAA AATGCAGATT CCCTCTCAGG TCTCTTCTGC
  TGCTCCCTTT CCAGTTTCTT                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss373078374	MGP_WTSI_7_134119604	EVA_MGPV3	EVA_MGPV3	f	SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	T	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs233049683					SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	T	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss373078374	MGP_WTSI_7_134119604	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:126575262 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Cdipt	CDP-diacylglycerol--inositol 3-phosphatidyltransferase			mRNA-UTR
Cdiptos	CDIP transferase, opposite strand			Coding-NonSynonymous
				mRNA-UTR
Cpgi19724	CpG island 19724			within coordinates
Gm73941	predicted gene, 73941			1052 bp downstream
Rr368439	regulatory region 368439			within coordinates
Rr655656	regulatory region 655656			313 bp distal
Rr655657	regulatory region 655657			within coordinates
Tssr2401	transcription start site region 2401			490 bp upstream
Tssr69140	transcription start site region 69140			1721 bp downstream
Tssr69141	transcription start site region 69141			466 bp downstream
Tssr69142	transcription start site region 69142			189 bp upstream
Tssr69143	transcription start site region 69143			248 bp upstream
Tssr69144	transcription start site region 69144			317 bp upstream
Tssr69145	transcription start site region 69145			342 bp upstream
Tssr69146	transcription start site region 69146			434 bp upstream
Tssr69147	transcription start site region 69147			457 bp upstream
Tssr69148	transcription start site region 69148			520 bp upstream
Tssr74865	transcription start site region 74865			674 bp upstream
Tssr74866	transcription start site region 74866			247 bp upstream
Tssr74867	transcription start site region 74867			243 bp upstream
Tssr74868	transcription start site region 74868			2 bp downstream
Tssr74869	transcription start site region 74869			34 bp downstream
Tssr74870	transcription start site region 74870			42 bp downstream