rs233056201 SNP Detail

Summary

• ID
  rs233056201
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:156940310 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        GAAGAGATGG GCGAAGACCT GTCCCCAGGC TGGCAGCAGT
  GAGTCCCCTG GGGCTGGAGG GGTTGCAGGT GCTTTAAAAC TCTGATTTTG TCTGGAGTCA
  Y
  GACAGACTCA GGAGTAGCCT GGTATGAGGT GTCCTCTGAA CCTAGCCTCT CCTAAAGCAG
  GGGACAGGGG GAGTTGTACC AGGAAGACAG AGATGGAGC                       
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss320584165	CHEV_2_156924126	CHEVERUD	SCREENING_POP	f	SNP	T	C
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs233056201					SNP	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:156940310 () rs orientation: forward

Symbol	Name	Function Class
Rr568433	regulatory region 568433	1560 bp proximal
Samhd1	SAM domain and HD domain, 1	within coordinates
Tldc2	TBC/LysM associated domain containing 2	1908 bp downstream
Tssr27104	transcription start site region 27104	68 bp downstream
Tssr27105	transcription start site region 27105	113 bp downstream
Tssr27106	transcription start site region 27106	202 bp downstream
Tssr27107	transcription start site region 27107	346 bp downstream
Tssr27108	transcription start site region 27108	472 bp downstream
Tssr27109	transcription start site region 27109	544 bp downstream
Tssr27110	transcription start site region 27110	598 bp downstream
Tssr27111	transcription start site region 27111	749 bp downstream
Tssr27112	transcription start site region 27112	779 bp downstream
Tssr27113	transcription start site region 27113	796 bp downstream
Tssr27114	transcription start site region 27114	870 bp downstream
Tssr27115	transcription start site region 27115	986 bp downstream
Tssr27116	transcription start site region 27116	1083 bp downstream