rs233062113 SNP Detail

Summary

• ID
  rs233062113
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr13:98831616 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CCAGGCAGAG CCCGGCTCGC
  GGGTGCGGCG GCCGGGCAGG GCAGGGCAGG GCTGGCCGGT AGGATCTGGC CGCCACCGGG
  CGCTGCCCTC CTGAGGCACC GGCGCGCCGC TCCGGAGCAC AGAACTAGGG TCAGCTTCGC
  GGCCCTGGGA CCATAAGACT TGGCAGTGCA AGCGAGGGAT CGACGTGGGG GGCGGGGGGG
  R
  GGCAGATGGG CACGCTCCAC CAAGTTGTGG GTGCCAGCGA GTCCAGCTGG GGCTGCGTGA
  AGTGGCGACA CGGAGGCGGG CATCTGAGAA AGGAGCTGGT CCCTTAGCAG CCTAGGTGCA
  GCGCTCCGGG AGGGGGAAGG GGCCGGCTGA GGAATACCTG AGCCCCGGGG AAGAGCAACA
  GGGAAAGTCG GGCCACAGTC                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss389656845	MGP_WTSI_13_99465063	EVA_MGPV3	EVA_MGPV3	f	SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	G	A	A	A	A
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs233062113					SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	G	A	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss389656845	MGP_WTSI_13_99465063	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr13:98831616 () rs orientation: forward

Symbol	Name	Function Class
Cpgi6012	CpG island 6012	within coordinates
Rr281821	regulatory region 281821	within coordinates
Tmem171	transmembrane protein 171	274 bp upstream
Tssr123638	transcription start site region 123638	1963 bp upstream
Tssr123639	transcription start site region 123639	312 bp upstream
Tssr123640	transcription start site region 123640	289 bp upstream
Tssr123641	transcription start site region 123641	261 bp upstream
Tssr123642	transcription start site region 123642	203 bp upstream
Tssr123643	transcription start site region 123643	70 bp upstream
Tssr123644	transcription start site region 123644	452 bp downstream
Tssr123645	transcription start site region 123645	576 bp downstream