rs233064621 SNP Detail

Summary

• ID
  rs233064621
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr11:54800002 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTCTTCATCT TAGTTCTGAG
  CTATGTGTGG CTGCTCTGGA CTCACTCAAG TACACTCCTC CCAGGTATGT TCGACCAGGT
  GGGGGCTTTG TGCCTAATTT CCAGCTCTTT GAGAAAGGAG ATGTGAACGG GGAGAAAGAG
  CAGAAATTCT ACACTTTCCT GAAGGTGAGA GTGGGTAATA TGGAGGAAGC TCCCCTTAGC
  R
  GCTTAGGCCC TGGCCCACAG GAATGTCTTG GCATTGGTCT AGTAGACCCA TGAGAGGGCT
  TGGCAGACCC AGTCCTATCA CCCTACTGCA GACGTAAGAC AGGGTCCACA GCCTTCCAGT
  CAGCATAGAG ATGGACGGAC AGTCAAGTGT TCTTGTTCCC GAACTGGGCC CTTCCCTCAG
  TGCCAGTTTT CTCCCTGGAA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss383428907	MGP_WTSI_11_54722678	EVA_MGPV3	EVA_MGPV3	f	SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	A	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs233064621					SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	A	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss383428907	MGP_WTSI_11_54722678	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:54800002 () rs orientation: forward

Symbol	Name	Function Class
Gpx3	glutathione peroxidase 3	within coordinates
Tnip1	TNFAIP3 interacting protein 1	1609 bp downstream
Tssr3502	transcription start site region 3502	465 bp downstream
Tssr3503	transcription start site region 3503	939 bp upstream
Tssr101558	transcription start site region 101558	1999 bp downstream
Tssr101559	transcription start site region 101559	1976 bp downstream
Tssr101560	transcription start site region 101560	1930 bp downstream
Tssr101561	transcription start site region 101561	619 bp downstream
Tssr101562	transcription start site region 101562	572 bp downstream
Tssr101563	transcription start site region 101563	560 bp downstream
Tssr101564	transcription start site region 101564	539 bp downstream
Tssr101565	transcription start site region 101565	109 bp downstream
Tssr101566	transcription start site region 101566	63 bp downstream
Tssr101567	transcription start site region 101567	287 bp upstream
Tssr101568	transcription start site region 101568	363 bp upstream
Tssr101569	transcription start site region 101569	446 bp upstream
Tssr101570	transcription start site region 101570	468 bp upstream
Tssr101571	transcription start site region 101571	522 bp upstream
Tssr101572	transcription start site region 101572	617 bp upstream
Tssr101573	transcription start site region 101573	654 bp upstream
Tssr101574	transcription start site region 101574	668 bp upstream
Tssr101575	transcription start site region 101575	716 bp upstream
Tssr101576	transcription start site region 101576	730 bp upstream
Tssr101577	transcription start site region 101577	759 bp upstream
Tssr101578	transcription start site region 101578	842 bp upstream
Tssr108006	transcription start site region 108006	1891 bp upstream
Tssr108007	transcription start site region 108007	602 bp upstream
Tssr108008	transcription start site region 108008	541 bp upstream
Tssr108009	transcription start site region 108009	525 bp upstream
Tssr108010	transcription start site region 108010	105 bp upstream
Tssr108011	transcription start site region 108011	481 bp downstream
Tssr108012	transcription start site region 108012	515 bp downstream
Tssr108013	transcription start site region 108013	609 bp downstream
Tssr108014	transcription start site region 108014	616 bp downstream
Tssr108015	transcription start site region 108015	699 bp downstream
Tssr108016	transcription start site region 108016	751 bp downstream
Tssr108017	transcription start site region 108017	802 bp downstream
Tssr108018	transcription start site region 108018	817 bp downstream
Tssr108019	transcription start site region 108019	853 bp downstream
Tssr108020	transcription start site region 108020	909 bp downstream
Tssr108021	transcription start site region 108021	929 bp downstream
Tssr108022	transcription start site region 108022	940 bp downstream
Tssr108023	transcription start site region 108023	1193 bp downstream