rs233080175 SNP Detail

Summary

• ID
  rs233080175
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr5:135963587 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TACTGAGACG AGGAGGAGAA
  GGAGGCGGCA CGAGCTGCGA CCGCGGGACC CGGCGCAAGG AGGCTGCGGC TCCAATGCGT
  GCCGCGGGCG GACAACCCCC TGCGGTCCCG CCCACACGGG TGACGTAAAA GTCACCGCCT
  ACTCGCGCAT GCGCGCGCCC CGCCCGGTCC CGCCCGGTCC TGCATTTACT GGGCTTCTCT
  Y
  CTACTGGAAC ATTCGCGGTG GCTCTTTGCG ATTTTCTCAG TGTATCCCCA GTACTACACT
  GCTCCCTAAT GTGCCCCTTT CTTCACTTTA CCGTAAATCC TCAGCTTCAT CAAACCCACC
  TCTCCTTGCC CCCTGGGGGC CTCTCCCCCC CCCTTTTTTT TTTTTTTTTT TTTTTTTTTG
  CATAGCTTCT GGCGCGTGAC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss366846060	MGP_WTSI_5_136410603	EVA_MGPV3	EVA_MGPV3	f	SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	C	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs233080175					SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	C	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss366846060	MGP_WTSI_5_136410603	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr5:135963587 () rs orientation: forward

Symbol	Name	Function Class
Cpgi16773	CpG island 16773	within coordinates
Gm40346	predicted gene, 40346	417 bp upstream
Gm57297	predicted gene, 57297	within coordinates
Rr378682	regulatory region 378682	within coordinates
Rr622479	regulatory region 622479	1757 bp distal
Rr622480	regulatory region 622480	190 bp distal
Rr622481	regulatory region 622481	42 bp distal
Rr622482	regulatory region 622482	within coordinates
Tssr49205	transcription start site region 49205	356 bp upstream
Tssr53779	transcription start site region 53779	1028 bp upstream
Tssr53780	transcription start site region 53780	165 bp upstream
Tssr53781	transcription start site region 53781	120 bp upstream
Tssr53782	transcription start site region 53782	100 bp upstream
Ywhag	tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, gamma polypeptide	117 bp upstream