rs233080198 SNP Detail

Summary

• ID
  rs233080198
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:126260003 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        CCATACCAGG CTTCTGTCAT CAAGAGCTAG TTAGTGTCAG
  CAATAGTGTC TGGGTTTGGT GTCTGCAGGT GGAATGGATC CCTAGGTGGG GTGGTCTCTG
  R
  ATGGCTTTCC ACTCATTCTC TGCTCCACTC TTTGTCCTTG CATTTCTTTT AGACAGGAAC
  AATTCTAGGT TAATATTTTT GAGATGGGTG AGTGACCCC                       
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss320945450	CHEV_3_126169272	CHEVERUD	SCREENING_POP	f	SNP	A	G
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs233080198					SNP	A	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:126260003 () rs orientation: forward

Symbol	Name	Function Class
Gm17225	predicted gene 17225	within coordinates
Gm46823	predicted gene, 46823	1993 bp upstream
Rr375709	regulatory region 375709	1332 bp downstream