rs233086073 SNP Detail

Summary

• ID
  rs233086073
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr5:24630719 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGGAGGAAAG GGCGGGGACT
  GGGGCGCAGG GAGCGAGGTT TTAGGGAGAA GGATGGGGAG GCGAGTGGGA GTACGGGTCG
  GAAGCGAGAT TCCGTGGTCC GCCTCTTAAG AGTTACCTAA AGCCAAGGTG CCGCGCCCCC
  TGTCACCAGG AGCGGGTAGT CTCAGGGAGC TACTGCCTTC AGCTCGCTCT CCCACTCCCG
  K
  GAGGGTTCCA GACGACCCTG TGCCCCAGAA ACTCGCCACT TTGTGGGTTG CCTGGGACCG
  CAACTCCTCG GATCTCGGGA TTGAGAGATG GAGCCATGAA AAGGGTTGGC GGGTCAGGTC
  AGGACAAGAG GTCAGACAGA AGGGGGAGCA GCTGGGTGAG GGTGGGAAGG ACAAGCCTGA
  AGTTTGAGTC CTAGGGGACT                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss321495725	CHEV_5_23931539	CHEVERUD	SCREENING_POP	f	SNP	G	T
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs233086073					SNP	G	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr5:24630719 () rs orientation: forward

Symbol	Name	Function Class
Cpgi15599	CpG island 15599	1346 bp distal
Cpgi15600	CpG island 15600	within coordinates
Rr124927	regulatory region 124927	within coordinates
Rr399000	regulatory region 399000	1927 bp downstream
Slc4a2	solute carrier family 4 (anion exchanger), member 2	within coordinates
Tssr45415	transcription start site region 45415	1873 bp downstream
Tssr45416	transcription start site region 45416	1856 bp downstream
Tssr45417	transcription start site region 45417	1763 bp downstream
Tssr45418	transcription start site region 45418	430 bp downstream
Tssr45419	transcription start site region 45419	1121 bp upstream
Tssr45420	transcription start site region 45420	1786 bp upstream