rs233087842 SNP Detail

Summary

• ID
  rs233087842
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr11:98658686 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        GATGG AGAGGTGTCT TCCCCCCCCC
  M
  CACACCCCCT TGGCAGTAGT CCCCC                                      
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss323827335	CHEV_11_98629174	CHEVERUD	SCREENING_POP	f	SNP	C	A
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs233087842					SNP	C	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:98658686 () rs orientation: forward

Symbol	Name	Function Class
Cpgi3768	CpG island 3768	355 bp proximal
Gm57390	predicted gene, 57390	113 bp downstream
Nr1d1	nuclear receptor subfamily 1, group D, member 1	72 bp downstream
Rr456271	regulatory region 456271	1477 bp distal
Thra	thyroid hormone receptor alpha	Intron
Tssr104786	transcription start site region 104786	1583 bp downstream
Tssr104787	transcription start site region 104787	1513 bp downstream
Tssr110587	transcription start site region 110587	364 bp downstream