rs233090571 SNP Detail

Summary

• ID
  rs233090571
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:90576100 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CCACTAATCT GCCGTCGTTC
  GCTGCTCGCG CTCCGGCTCA TGATGGGGAA GAAGTCCCGG GCGGTACCCG GCCGCAGGCC
  TATCCTGCAG CTCTCTCCAC CGGGTCCTCG GAGCAGCACC CCGGGCCGGG ATCCCGACCC
  CGATCCGGAT CCCGAGGCAG ATTCGACTGC GGCGGCGACA AGCCAGTCAG CGCCGGCAGC
  W
  GCGACGGCGG CGGCCGCGAC GTCGCCCGCG GTGCCTGCCT CCGCTGCCCC AGAGGACTCG
  CCTTCAGAAG GTAAGGGCGC GCGAGAGGAG CCCTGCTTTT ATTTGGGACG TCTGAAACTC
  GAGCACGGGG CTTGCGGCCT AGGTTCCCGG GTGTCTCTTC GGACCCGGTG AAGAAGAGAA
  ACCCTGGCGG GCGAGGTACA                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LG/J	LP/J	MA/MyJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss354801479	MGP_WTSI_2_90585913	EVA_MGPV3	EVA_MGPV3	f	SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	T	A	A	A	A	T	A	A	A	A	A	A	A	A	A	A	T	A	A	A	A	A	A	T	A	A	A	A
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LG/J	LP/J	MA/MyJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs233090571					SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	T	A	A	A	A	T	A	A	A	A	A	A	A	A	A	A	T	A	A	A	A	A	A	T	A	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss354801479	MGP_WTSI_2_90585913	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:90576100 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Cpgi11884	CpG island 11884			within coordinates
Fnbp4	formin binding protein 4			Coding-Synonymous
				Noncoding-Transcript-Variant
Gm75673	predicted gene, 75673			within coordinates
Rpl30-ps3	ribosomal protein L30, pseudogene 3			1860 bp downstream
Rr367222	regulatory region 367222			229 bp downstream
Rr560566	regulatory region 560566			560 bp distal
Rr560567	regulatory region 560567			376 bp distal
Rr560568	regulatory region 560568			62 bp proximal
Tssr18764	transcription start site region 18764			287 bp downstream
Tssr18765	transcription start site region 18765			241 bp downstream
Tssr18766	transcription start site region 18766			153 bp downstream
Tssr25135	transcription start site region 25135			507 bp upstream
Tssr25136	transcription start site region 25136			468 bp upstream