rs233090729 SNP Detail

Summary

• ID
  rs233090729
• Variation Type
  SNP
• Alleles
  G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:55149333 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                    tacacatag gcacattcac acacacatgc
  acacaAGCTG TATCATTATG TCACTATTAA CATAGCCTCG TGTGCCAGTG TGTGGCCTTG
  GTGGCCCTCC CTGATGCATG TCCTCTTCAT ACATGGGTCT GCAGCCCTTG CTATGCGGCT
  G
  CTGTCACTTG CGTGGTTTTC CTGAGACACA TGCCTGTTCC CTCACCTCAA CTACAAGAGA
  GGTCACCTCT AGCCCAGACC CTTGCCCTCT TGTCCCTGCC GAAGCCTCTC CTCCCACTTC
  CCACCTCCCA CTACCTCTCT CCGTCTAGCA                                 
  
  G = G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss321805439	CHEV_6_55122342	CHEVERUD	SCREENING_POP	f	SNP	G	G
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs233090729					SNP	G	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:55149333 () rs orientation: forward

Symbol	Name	Function Class
Inmt	indolethylamine N-methyltransferase	within coordinates
Rr136025	regulatory region 136025	333 bp distal
Rr144444	regulatory region 144444	1726 bp distal
Rr144445	regulatory region 144445	368 bp distal
Rr146343	regulatory region 146343	1067 bp proximal
Tssr61113	transcription start site region 61113	1126 bp downstream
Tssr61114	transcription start site region 61114	1579 bp downstream