rs233093729 SNP Detail

Summary

• ID
  rs233093729
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr11:87019309 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                    ATTTTCAGG CTCACATAAT TAGTTGATTA
  CATCAGGACA GAAATTCAGA TTCTGAATTA GTTTGCCTCT AATCACGATA TCTTTACAAA
  TGTTTGTTTA TTTAGtgtgt gcatgggtgt gcattgatgt gccggcgtgg aggtcaggac
  W
  acttggagtt gcttctcctt ttaccatgtg ggattcctgg gatagaagtc aggtcttcag
  gtttggtggt aggagccttt ggcaatgctg agccaccttg cccgttccAG TATATCTTCT
  TAAAAATTTG CTCATGTctg gactcagtga                                 
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss323772711	CHEV_11_86941985	CHEVERUD	SCREENING_POP	f	SNP	T	A
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs233093729					SNP	T	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:87019309 () rs orientation: forward

Symbol	Name	Function Class
Cpgi3484	CpG island 3484	595 bp distal
Gm11491	predicted gene 11491	1455 bp upstream
Rr453749	regulatory region 453749	1589 bp distal
Rr453750	regulatory region 453750	1396 bp distal
Rr453751	regulatory region 453751	374 bp distal
Trim37	tripartite motif-containing 37	within coordinates
Tssr103911	transcription start site region 103911	1432 bp downstream
Tssr103912	transcription start site region 103912	1378 bp downstream
Tssr103913	transcription start site region 103913	1350 bp downstream
Tssr103914	transcription start site region 103914	1312 bp downstream
Tssr103915	transcription start site region 103915	1219 bp downstream
Tssr103916	transcription start site region 103916	1204 bp downstream