rs233103952 SNP Detail

Summary

• ID
  rs233103952
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr16:32696960 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTTACAGAAA TTCACTCACT
  ATTCTTTGCC TCCCGAGTAT TGCAATTAAA GGCACTGCAA AACACACCTG GCCCAACTTG
  ACTTTTGAGA ATAAGGGATT GTATTTCTCA AATTCTCAAT AGAAAATTAT ACATTTCCTC
  AAGATAAGAC TACTATGATT CATCAAACAC CCCAAAACAT CATGCTTTTG GATGGAATCA
  Y
  GAATTAAGAG TGGCCTTTTC TTTTAACCAT ATCGTAAGAA GCATTAGTAT GTAGTTTTAA
  GATGGATCAA TAGCTGTCAC AATCTTTACT AAAAAGGGTA GATACAATAT AACCAGGTCT
  CAGCTGGTAA AAGTTAGAAA ATATGTTATT AATAGATGCA ATTGTACATG ATATGAAGTG
  TTTTAAAGTA TGGAAGCTCC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss395868149	MGP_WTSI_16_32876676	EVA_MGPV3	EVA_MGPV3	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs233103952					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss395868149	MGP_WTSI_16_32876676	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr16:32696960 () rs orientation: forward

Symbol	Name	Function Class
Cpgi8199	CpG island 8199	756 bp proximal
Fyttd1	forty-two-three domain containing 1	910 bp upstream
Rr404782	regulatory region 404782	1225 bp upstream
Rr514841	regulatory region 514841	1069 bp distal
Rr514842	regulatory region 514842	451 bp distal
Rr514843	regulatory region 514843	369 bp proximal
Rr514844	regulatory region 514844	1166 bp proximal
Rr514845	regulatory region 514845	1551 bp proximal
Rubcn	RUN domain and cysteine-rich domain containing, Beclin 1-interacting protein	within coordinates
Tssr138060	transcription start site region 138060	1185 bp upstream
Tssr138061	transcription start site region 138061	1243 bp upstream
Tssr138062	transcription start site region 138062	1295 bp upstream
Tssr138063	transcription start site region 138063	1495 bp upstream
Tssr138064	transcription start site region 138064	1511 bp upstream
Tssr140832	transcription start site region 140832	1019 bp downstream
Tssr140833	transcription start site region 140833	1047 bp downstream
Tssr140834	transcription start site region 140834	1097 bp downstream
Tssr140835	transcription start site region 140835	1133 bp downstream