rs233117949 SNP Detail

Summary

• ID
  rs233117949
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:50322559 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TATATTGAAA ATGAACTTTT
  GAAATACTGT TTGTGGGGAA ATTTAGGTAA ACTACATATG CAGGCAATCA TTCTTCTATC
  CATATATAAT GTAAACAGAA GCTATGCAAA TGACTTGCTA CCTTCTCTAT AATCTCCTTG
  CCATTACACA GTGCCATGAC CTAATTCTCA GCTTGAATGA TTAGGGACAT AAGAGATCAC
  Y
  TGCATTCTAT CAGCACCAAC ACAGAGTGCA TCAGGAAGCC AATGATATTC AAATAAAATA
  AAGTTTCTTG AGTCATCTCC ATTGAAATCT CAAATGTATT TCTCTCTAAA AATAAGGAAA
  GAAAAAAAAA CTACAAATAA AACCTCATTC ATTTCTTTTC TATTATTCAT GACTTAACCC
  AGTTGACATC ACTGACTTCT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss357906258	MGP_WTSI_3_50172032	EVA_MGPV3	EVA_MGPV3	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs233117949					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss357906258	MGP_WTSI_3_50172032	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:50322559 () rs orientation: forward

Symbol	Name	Function Class
Slc7a11	solute carrier family 7 (cationic amino acid transporter, y+ system), member 11	within coordinates
Tssr33101	transcription start site region 33101	1680 bp upstream
Tssr33102	transcription start site region 33102	1657 bp upstream
Tssr33103	transcription start site region 33103	1583 bp upstream
Tssr33104	transcription start site region 33104	1569 bp upstream
Tssr33105	transcription start site region 33105	1485 bp upstream
Tssr33106	transcription start site region 33106	1464 bp upstream
Tssr33107	transcription start site region 33107	1439 bp upstream
Tssr33108	transcription start site region 33108	1369 bp upstream
Tssr33109	transcription start site region 33109	1311 bp upstream
Tssr33110	transcription start site region 33110	1244 bp upstream
Tssr33111	transcription start site region 33111	1222 bp upstream
Tssr33112	transcription start site region 33112	1183 bp upstream
Tssr33113	transcription start site region 33113	1139 bp upstream
Tssr33114	transcription start site region 33114	1090 bp upstream
Tssr33115	transcription start site region 33115	1050 bp upstream
Tssr33116	transcription start site region 33116	645 bp upstream
Tssr33117	transcription start site region 33117	420 bp upstream
Tssr33118	transcription start site region 33118	387 bp upstream
Tssr33119	transcription start site region 33119	368 bp upstream
Tssr33120	transcription start site region 33120	171 bp downstream
Tssr33121	transcription start site region 33121	464 bp downstream
Tssr33122	transcription start site region 33122	558 bp downstream
Tssr33123	transcription start site region 33123	1566 bp downstream