rs233120195 SNP Detail

Summary

• ID
  rs233120195
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:151958901 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                    AAGCATTTC TTTAATCTAG GTGGTTGAAT
  AAGTAAATAT GAACACGTTT CAAAATTAGA CTAGATTATA CTAGAATAGC CCCTCTGCCC
  CACActgcag aagaaccctc tagggtcccg tgggttcctg aaagcaccga caatgctaag
  Y
  cctgtgcatg ctgtttttct tgtatgaaaa atatatacat ataaaacaat atatattcgg
  cacagtaaga gacaaagaac aaataattat aaaaggatag ttataaaagt atactgtaat
  ggaatgcatg taaagcttca gtttgcctct                                 
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss321028504	CHEV_3_151916228	CHEVERUD	SCREENING_POP	f	SNP	C	T
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs233120195					SNP	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:151958901 () rs orientation: forward

Symbol	Name	Function Class
Gm43185	predicted gene 43185	461 bp upstream
Nexn	nexilin	Intron
Tssr1100	transcription start site region 1100	351 bp downstream
Tssr32404	transcription start site region 32404	344 bp upstream
Tssr36193	transcription start site region 36193	415 bp upstream
Tssr36194	transcription start site region 36194	301 bp upstream
Tssr36195	transcription start site region 36195	188 bp upstream
Tssr36196	transcription start site region 36196	161 bp upstream
Tssr36197	transcription start site region 36197	130 bp upstream
Tssr36198	transcription start site region 36198	416 bp downstream
Tssr36199	transcription start site region 36199	431 bp downstream
Tssr36200	transcription start site region 36200	455 bp downstream
Tssr36201	transcription start site region 36201	491 bp downstream
Tssr36202	transcription start site region 36202	537 bp downstream