rs233122878 SNP Detail

Summary

• ID
  rs233122878
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr7:26865572 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CAGAGAGGAA GGTGATAGGG
  AGACAGATAT CTGTGGACGA AAAGCGACGA TGCAAGTGGA AAATACAAGG TACCTGCCTG
  AGGTTTCTAT AGAGACTCAG AGAGATGAGG AGGGAGGAGA CACAGAAAAC GGGAGTGTGG
  AATCTAGGGT AAAGTCAGGG TTGTGGGGAA CCAACGGGCA ATGCCACCGC GCAACATTCG
  S
  GGGAACCTAA TCGCCTGGGT GGAAGATTAC GAGCCAGGGC AGGCGGGGAA AACCGGGAGT
  CCAGGGACAA AGAGAACAGG GAGAAAAACA AGACGGCAGG GGAGCGGGAG GGCCGGTGGG
  GTCGACCTGT GCCCTACGGG AGGAAGCCTA CTGGGGCCCG ACACACACCC AGCCGGAAGG
  GAGGTCCTGC CAGACGGACG                                            
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss370831953	MGP_WTSI_7_27951166	EVA_MGPV3	EVA_MGPV3	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	G	C	C	G	C	C	C	C	G	C	C	C	C	G	C	C	C	C	C	C	G	C	C	C	C	C	C	C	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs233122878					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	G	C	C	G	C	C	C	C	G	C	C	C	C	G	C	C	C	C	C	C	G	C	C	C	C	C	C	C	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss370831953	MGP_WTSI_7_27951166	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:26865572 () rs orientation: forward

Symbol	Name	Function Class
Cpgi18625	CpG island 18625	1325 bp distal
Cpgi18626	CpG island 18626	within coordinates
Egln2	egl-9 family hypoxia-inducible factor 2	within coordinates
Rr400185	regulatory region 400185	928 bp upstream
Tssr2152	transcription start site region 2152	393 bp downstream
Tssr71351	transcription start site region 71351	235 bp downstream
Tssr71352	transcription start site region 71352	280 bp downstream
Tssr71353	transcription start site region 71353	323 bp downstream
Tssr71354	transcription start site region 71354	565 bp downstream
Tssr71355	transcription start site region 71355	585 bp downstream