rs233130944 SNP Detail

Summary

• ID
  rs233130944
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr11:105828085 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GACAGCCAGA TGCTACGCTC
  TCAAGGCTTC ATGTGATCCT GCCTAATTTC CACTACCCCT GGATGCCTCC TAGGACCTGC
  TGCTGAGAGG TGGCTGTCGG TAGGCCCCAC TCCCTACCAT CTAGCCCCCA CAGGTGGTGT
  GCTTATTAGA CCAAGCACCT GCTGGCTCTT ACCCCAGGGA CAGACAGACC CTCTAGCTCA
  K
  CCAGGTCCAC AGGAAACAAT ATACACATGC ATGTATGTCT ACTTCTTTTC CCAACTTCCA
  GCTGCCCCTG AAGATAACTA ATAGCCCAGT CTGGCCCTGC TCTATCTAGA AGGCAACTGT
  AGCCCTGGAG ATGCCATCTG CTGAAACCAG AGGCAGGTAC CAGTGCAACC GATGGAAAGC
  AGGTATCACC CTCCAACCAC                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss384578846	MGP_WTSI_11_105798573	EVA_MGPV3	EVA_MGPV3	f	SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	T	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs233130944					SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	T	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss384578846	MGP_WTSI_11_105798573	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:105828085 () rs orientation: forward

Symbol	Name	Function Class
Cyb561	cytochrome b-561	within coordinates
Rr238672	regulatory region 238672	1116 bp proximal
Rr248093	regulatory region 248093	86 bp distal
Tssr111265	transcription start site region 111265	958 bp upstream
Tssr111266	transcription start site region 111266	943 bp upstream
Tssr111267	transcription start site region 111267	917 bp upstream
Tssr111268	transcription start site region 111268	769 bp upstream
Tssr111269	transcription start site region 111269	735 bp upstream
Tssr111270	transcription start site region 111270	345 bp upstream
Tssr111271	transcription start site region 111271	326 bp upstream
Tssr111272	transcription start site region 111272	585 bp downstream
Tssr111273	transcription start site region 111273	1301 bp downstream
Tssr111274	transcription start site region 111274	1709 bp downstream