rs233137098 SNP Detail

Summary

• ID
  rs233137098
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr13:5913542 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGTAAGCTTT AGCCCTTTTG
  CTGGTAGCCT GTGCTCAAGA TGGTCTGTAC CCTGATAACA TTTTTTTGTT GCAGTTTAGT
  GCCGAAATTT CTGTCTGTAG AATAGAATAC ACAGAGGCAC AGACGGCCTT ATATGGGCAT
  GCAGGCAAAG CTAGTGAAAA ATCAGGGCCT ACATAATTGA ATCCTAAAAT CTTTCCTACC
  R
  TTTTTCTTTT CCAGTGGCTA GAAAGTTTGA GATGGTGGGG AGAGGGGATT GCTGATCTCT
  GCAGTGTGTA GCTCCTTGAA AGGTTGGTGG CAGGGCTGGG AAGGGGCACC CTGTTATGGC
  ACACTGCATG TATATTTGAG CCGGGTCCTT ATTTGGCTGC AGGTCAGAAT TTCAAAAGGA
  AGTCTCCTTT GGCATTGCGT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss324224091	CHEV_13_5862789	CHEVERUD	SCREENING_POP	f	SNP	A	G
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs233137098					SNP	A	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr13:5913542 () rs orientation: forward

Symbol	Name	Function Class
Cpgi5253	CpG island 5253	1607 bp distal
Klf6	Kruppel-like transcription factor 6	within coordinates
Rr387905	regulatory region 387905	972 bp downstream
Rr403559	regulatory region 403559	997 bp upstream
Tssr118239	transcription start site region 118239	1993 bp downstream
Tssr118240	transcription start site region 118240	1979 bp downstream
Tssr118241	transcription start site region 118241	1906 bp downstream
Tssr118242	transcription start site region 118242	1870 bp downstream
Tssr118243	transcription start site region 118243	1668 bp downstream
Tssr118244	transcription start site region 118244	922 bp downstream
Tssr118245	transcription start site region 118245	671 bp downstream
Tssr118246	transcription start site region 118246	272 bp upstream
Tssr118247	transcription start site region 118247	338 bp upstream
Tssr118248	transcription start site region 118248	943 bp upstream
Tssr118249	transcription start site region 118249	1148 bp upstream
Tssr118250	transcription start site region 118250	1207 bp upstream
Tssr118251	transcription start site region 118251	1227 bp upstream
Tssr118252	transcription start site region 118252	1307 bp upstream
Tssr121319	transcription start site region 121319	762 bp downstream
Tssr121320	transcription start site region 121320	786 bp downstream
Tssr121321	transcription start site region 121321	809 bp downstream
Tssr121322	transcription start site region 121322	830 bp downstream