rs233148619 SNP Detail

Summary

• ID
  rs233148619
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:144111080 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TAGCTGACAA ATTTGCCCAA
  GTTGAACTCC AGTTCTTTGA CACTTGCCAA ATTCCCTTCA AATGACTGCC ATCCAGATGT
  GATCTGCCAG TCTAGTACAG ACCAGATAAC ACAAACGAAA CCATGTACTA AAACCAGTCA
  TTTACCTCAA CATTTCTTTA ACTCAAGAGA AAGCCAAAGT TGTCGTTTTC TCCACTGTGA
  Y
  CATCTCCAAT TTTGCTTATC AGAGTGATGG TGAACTCATT TTTTTAAAAA TTCTATTAGC
  AGTTAATAAA GACGATCAAG TCATTTTACA TAAATGATTC TGCTCCGTAC CAAAAAAGGA
  GGAAAAAAAG AGCCACCAGG GCCTCTCCTG CCCCTAGTAC CTATTATATA TGCCAGGGGA
  GAGAAACTAA TTCTTCTAAT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss355978199	MGP_WTSI_2_144094896	EVA_MGPV3	EVA_MGPV3	f	SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	C	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs233148619					SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	C	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss355978199	MGP_WTSI_2_144094896	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:144111080 () rs orientation: forward

Symbol	Name	Function Class
Cpgi12351	CpG island 12351	956 bp proximal
Mgme1	mitochondrial genome maintenance exonuclease 1	1744 bp upstream
Rr397362	regulatory region 397362	1591 bp upstream
Rr566423	regulatory region 566423	969 bp distal
Rr566424	regulatory region 566424	within coordinates
Rr566425	regulatory region 566425	654 bp proximal
Rr566426	regulatory region 566426	1402 bp proximal
Rr566427	regulatory region 566427	1792 bp proximal
Snx5	sorting nexin 5	Intron
Tssr20524	transcription start site region 20524	1414 bp upstream
Tssr20525	transcription start site region 20525	1462 bp upstream
Tssr20526	transcription start site region 20526	1718 bp upstream
Tssr20527	transcription start site region 20527	1851 bp upstream
Tssr26594	transcription start site region 26594	906 bp downstream
Tssr26595	transcription start site region 26595	1280 bp downstream
Tssr26596	transcription start site region 26596	1344 bp downstream
Tssr26597	transcription start site region 26597	1620 bp downstream
Tssr26598	transcription start site region 26598	1676 bp downstream
Tssr26599	transcription start site region 26599	1692 bp downstream