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rs233161936 SNP Detail
Summary
  • ID
    rs233161936
  • Variation Type
    SNP
  • Alleles
    C/T
Genome Location and Flanking Sequence
  • Location
    Chr7:79491156 (GRCm39)
  • SNP Orientation to the Genome
    forward
  • SNP Reference Flanking Sequence
                                                ATCTGCGTTG TAGCCACCAC
TCTGTCCAAA GCAGTGTTGT TAGAGAAGGA GTAAGGAGCA TAGTTTTAGG GTACAGAAGA
TGGCTGCCCC AACCTGCTTA CTCCCCTTCA CCCAACCCCA CACAGCCTCA GGATCCTGAC
CAACAAGCTG CCTTGGGAGA CAAAAGCTTC CAGATGCCAT CTAAGCCCTG GCAGGCTTCA
Y
GCCAGTGTGA GCCGAGGTGG GTCCCGGACA ATTTTCTCTC TTCTGAGCCT CAGTATTCCT
GTCCATCCAA GGAACCCTTT CATACCACAA CCCAGTACCC CTAGGAACTG CCTCCCCCTA
CAGATGAGCA ATGGAGCTAC TGAGGTCTCC TGAAGTCTCC AACCTCTCCC TTTCCATAAG
CCCCAGATGC AGCCCTGTGT                                            

Y = C/T

    Note: Sequence in lower case indicates low-complexity or repetitive sequence
    BLAST SNP flanking sequence against the mouse Genome
SNP Assays
and
SNP Consensus
Strain alleles of submitted assays, and consensus values for this SNP
Legend
Assay ID Submitter
SNP ID		 Submitter
Handle		 Population
ss orientation
 Variation Type
129P2/OlaHsd
129S1/SvImJ
129S5/SvEvBrd
A/J
AKR/J
B10.RIII-H2 H2-T18/(71NS)SnJ
BALB/cByJ
BALB/cJ
BTBR T<+> Itpr3/J
BUB/BnJ
C3H/HeH
C3H/HeJ
C57BL/6J
C57BL/6NJ
C57BL/10J
C57BL/10SnJ
C57BR/cdJ
C57L/J
C58/J
CAST/EiJ
CBA/J
CE/J
CZECHII/EiJ
DBA/1J
DBA/2J
FVB/NJ
I/LnJ
JF1/MsJ
KK/HlJ
LEWES/EiJ
LG/J
LP/J
MA/MyJ
MOLF/EiJ
NOD/ShiLtJ
NON/ShiLtJ
NZB/BlNJ
NZO/HlLtJ
NZW/LacJ
PL/J
PWK/PhJ
QSi3/Ianm
QSi5/Ianm
RF/J
RIIIS/J
SEA/GnJ
SJL/J
SM/J
SPRET/EiJ
ST/bJ
SWR/J
WSB/EiJ
ZALENDE/EiJ
ss372032935 MGP_WTSI_7_86986294 EVA_MGPV3 EVA_MGPV3 f SNP C C C C C C C C C C C C C C C C C C T C C C C C C C C C C T C C C C C C C C C C T C C C C C C C C C C C C
SNP Consensus Information
SNP Consensus Type
129P2/OlaHsd
129S1/SvImJ
129S5/SvEvBrd
A/J
AKR/J
B10.RIII-H2 H2-T18/(71NS)SnJ
BALB/cByJ
BALB/cJ
BTBR T<+> Itpr3/J
BUB/BnJ
C3H/HeH
C3H/HeJ
C57BL/6J
C57BL/6NJ
C57BL/10J
C57BL/10SnJ
C57BR/cdJ
C57L/J
C58/J
CAST/EiJ
CBA/J
CE/J
CZECHII/EiJ
DBA/1J
DBA/2J
FVB/NJ
I/LnJ
JF1/MsJ
KK/HlJ
LEWES/EiJ
LG/J
LP/J
MA/MyJ
MOLF/EiJ
NOD/ShiLtJ
NON/ShiLtJ
NZB/BlNJ
NZO/HlLtJ
NZW/LacJ
PL/J
PWK/PhJ
QSi3/Ianm
QSi5/Ianm
RF/J
RIIIS/J
SEA/GnJ
SJL/J
SM/J
SPRET/EiJ
ST/bJ
SWR/J
WSB/EiJ
ZALENDE/EiJ
rs233161936 SNP C C C C C C C C C C C C C C C C C C T C C C C C C C C C C T C C C C C C C C C C T C C C C C C C C C C C C
Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter
Assay ID Submitter
SNP ID		 Submitter
Handle		 Population
ss orientation
 Variation
Type		 Alleles
ss372032935 MGP_WTSI_7_86986294 SC_MOUSE_GENOMES SC_MOUSE_GENOMES f SNP C/T
Gene/Marker
Associations
and
Function
Classes
MGI genes/markers associated with the SNP
Location: Chr7:79491156 () rs orientation: forward
Symbol Name Transcript Protein Function
Class		 Allele Residue Codon
Position		 AA
Position
Anpep alanyl aminopeptidase, membrane within coordinates
Gm71751 predicted gene, 71751 1011 bp upstream
Tssr67371 transcription start site region 67371 421 bp upstream
Tssr67372 transcription start site region 67372 609 bp upstream
Tssr67373 transcription start site region 67373 1069 bp upstream
Tssr67374 transcription start site region 67374 1115 bp upstream
Tssr67375 transcription start site region 67375 1149 bp upstream
Tssr73160 transcription start site region 73160 1910 bp upstream
Tssr73161 transcription start site region 73161 491 bp upstream
Tssr73162 transcription start site region 73162 433 bp upstream
Tssr73163 transcription start site region 73163 412 bp upstream
Tssr73164 transcription start site region 73164 249 bp upstream
Tssr73165 transcription start site region 73165 277 bp downstream
Tssr73166 transcription start site region 73166 318 bp downstream
Tssr73167 transcription start site region 73167 526 bp downstream
Tssr73168 transcription start site region 73168 538 bp downstream
Tssr73169 transcription start site region 73169 566 bp downstream
Tssr73170 transcription start site region 73170 597 bp downstream
Tssr73171 transcription start site region 73171 668 bp downstream
Tssr73172 transcription start site region 73172 696 bp downstream
Tssr73173 transcription start site region 73173 712 bp downstream
Tssr73174 transcription start site region 73174 800 bp downstream
Tssr73175 transcription start site region 73175 821 bp downstream
Tssr73176 transcription start site region 73176 879 bp downstream
Tssr73177 transcription start site region 73177 909 bp downstream
Tssr73178 transcription start site region 73178 935 bp downstream
Tssr73179 transcription start site region 73179 999 bp downstream
Tssr73180 transcription start site region 73180 1066 bp downstream
Tssr73181 transcription start site region 73181 1149 bp downstream
Tssr73182 transcription start site region 73182 1168 bp downstream
Tssr73183 transcription start site region 73183 1207 bp downstream
Tssr73184 transcription start site region 73184 1867 bp downstream
Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
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Send questions and comments to User Support. 		last database update
12/10/2024
MGI 6.24 		The Jackson Laboratory