rs233169901 SNP Detail

Summary

• ID
  rs233169901
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr16:9811633 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ACTGCAGACC CTGGAGCCAA
  ATCTTAGATG CACGTGGGCA GTGGGCTGCA CACGCTAACA GACACGCGCG CTTTTCTGCG
  CATATCCCCA GGCCGCCTTA GAGATGCCCA CGGCCAGCTG GAGCCTTCAA ACGTCCTCAG
  ACGGTGTGCA CACAAGCACT GTGCCAGGTG CACAACAGTG CTTGCCTGAA AATGCCTGTA
  Y
  GGTCGTGCAC GCGTGTACAA GCGCGCGCCC TTCGGCTCGG GTGTTGTTGC ACCCCGGGGG
  AAGTTGGGGC AAACTCCAGC CTTGGCTTTT TAGGGTGAGC AAGGTGGAGT GCAGGGCCGC
  AGCGCCACCT GGTGCTCCTC CAACGCCTCG CCATTGGGCT CTCCCTCTCC AGTTTTCTCT
  CCCTCGCTCT TTTCCCCCCA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss395370669	MGP_WTSI_16_9993862	EVA_MGPV3	EVA_MGPV3	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs233169901					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss395370669	MGP_WTSI_16_9993862	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr16:9811633 () rs orientation: forward

Symbol	Name	Function Class
Cpgi7945	CpG island 7945	within coordinates
Grin2a	glutamate receptor, ionotropic, NMDA2A (epsilon 1)	within coordinates
Rr511422	regulatory region 511422	746 bp distal
Rr511423	regulatory region 511423	119 bp proximal
Rr511424	regulatory region 511424	255 bp proximal
Rr511425	regulatory region 511425	803 bp proximal
Rr511426	regulatory region 511426	1731 bp proximal
Tssr139893	transcription start site region 139893	778 bp downstream
Tssr139894	transcription start site region 139894	1231 bp downstream
Tssr139895	transcription start site region 139895	1275 bp downstream
Tssr139896	transcription start site region 139896	1530 bp downstream
Tssr139897	transcription start site region 139897	1546 bp downstream
Tssr139898	transcription start site region 139898	1579 bp downstream
Tssr139899	transcription start site region 139899	1609 bp downstream
Tssr139900	transcription start site region 139900	1643 bp downstream
Tssr139901	transcription start site region 139901	1739 bp downstream
Tssr139902	transcription start site region 139902	1757 bp downstream
Tssr139903	transcription start site region 139903	1793 bp downstream
Tssr139904	transcription start site region 139904	1859 bp downstream
Tssr139905	transcription start site region 139905	1932 bp downstream