rs233176712 SNP Detail

Summary

• ID
  rs233176712
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr19:11798782 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ATAATAATAA TAATAATGAT
  AATAATAATA ATAATCAAAC ACAGTGGCAC ATACTGGTAA TTCCAGAACT GGGAAAGTAG
  AAACAGTGGA TCCCTGAGAT TTACCAGCCA GATCTACCTA GCTGTGAGCG CCAGGCCAGT
  GAAAGACATT GTCTCAAAAA ACAATGAATG GCAGGGGGCG GGGAGGAGGG ACAAACCTAA
  R
  GTGTTTCTAA AATTGGATGT CTTGAATTCC ACCACCCTTA GAATATTCAT TCTATTCTTA
  GAATTGAGGG AATCTACCCA ACACATAGCA CTAAGTACAT ATACTTAAAA GAAATTGGAG
  ACATCTCAAA CTAATTACGT AGCAGCACAT CTAAAAACTC TAGAACAAAA AAAGAGAGAA
  AGAAAGAGAA AGAAAGAAAA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss401759422	MGP_WTSI_19_11895908	EVA_MGPV3	EVA_MGPV3	f	SNP	G	G	A	G	G	A	A	G	G	G	G	G	G	G	G	G	G	G	G	G	A	A	G	G	A	A	A	G	G	G	G	A	A	G	G	G	A	A	G	G	G	A	G	G	G	A	A	G	A
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs233176712					SNP	G	G	A	G	G	A	A	G	G	G	G	G	G	G	G	G	G	G	G	G	A	A	G	G	A	A	A	G	G	G	G	A	A	G	G	G	A	A	G	G	G	A	G	G	G	A	A	G	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss401759422	MGP_WTSI_19_11895908	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr19:11798782 () rs orientation: forward

Symbol	Name	Function Class
Cpgi10635	CpG island 10635	1274 bp distal
Gm41810	predicted gene, 41810	294 bp downstream
Gm59062	predicted gene, 59062	within coordinates
Rr544384	regulatory region 544384	1986 bp distal
Rr544385	regulatory region 544385	1360 bp distal
Rr544386	regulatory region 544386	879 bp distal
Rr544387	regulatory region 544387	942 bp distal
Tssr155287	transcription start site region 155287	63 bp upstream
Tssr155288	transcription start site region 155288	404 bp upstream