rs233182272 SNP Detail

Summary

• ID
  rs233182272
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr15:78457845 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GGGAAAAGGG AAGGAGTTGG
  AAGAGAAGGA AGAAGAGGAG TAGTGAGAGG AGGAGGAGGA GGAGGAGGAG TGAGAGGAGG
  AGGAGGAGGA GGAGGAGGAG GAGGAGGAGG AGGAGGAGGA GGAGGAGGAG GAGGAGGAAG
  AGTCAGGGAC AGATGCAGTA GAGCAAGCTG GTAGAAGTTT GGCAAGTCCA AACCTTCTCA
  Y
  AGCATGGTGC AATCTAAGCT TTCAGGAAGC TGAGACAAAG GGATTGCTGG GAGCTTGAGT
  CCAGGATTCA GAGTGAGAGT TCCAAGGCAG CCAGAGCCAT CGAGCGATAC AGCAAGATCC
  TAGCTGGGAA ACCACTCCAA ACCGAAAATC CTACCTACAA ACTGTCGTAG GCTTCTTGCC
  GTTTTGATGA TATCAACTAC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss394657257	MGP_WTSI_15_78404075	EVA_MGPV3	EVA_MGPV3	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs233182272					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss394657257	MGP_WTSI_15_78404075	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr15:78457845 () rs orientation: forward

Symbol	Name	Function Class
Cpgi7294	CpG island 7294	1612 bp distal
Gm36738	predicted gene, 36738	766 bp downstream
Rac2	Rac family small GTPase 2	862 bp upstream
Rr307919	regulatory region 307919	1156 bp proximal
Rr312023	regulatory region 312023	444 bp distal
Rr369961	regulatory region 369961	1838 bp downstream
Rr404481	regulatory region 404481	691 bp downstream
Tssr131969	transcription start site region 131969	1834 bp downstream
Tssr135251	transcription start site region 135251	970 bp upstream
Tssr135252	transcription start site region 135252	955 bp upstream
Tssr135253	transcription start site region 135253	895 bp upstream
Tssr135254	transcription start site region 135254	855 bp upstream
Tssr135255	transcription start site region 135255	441 bp upstream
Tssr135256	transcription start site region 135256	416 bp upstream