rs233205235 SNP Detail

Summary

• ID
  rs233205235
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:156267148 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                    TTTCTACAC ATTATATCAT TTATGGGCTG
  GAGGAGTAGT TTAATAGGAC AGTATGCCAC AAAGCCTTGA ATCTGATCTC CAACTCCCCC
  CTCAATTTTA ACAACATCAA AATTATAACA AGATTATGTA ATTCTACCAA GAATTATTAA
  Y
  TAGCACTGCC CTGTTAGAAT GAGCAGTTTT CTCTGTAGCC CTGTATGGAC AGCCCGCCTC
  CAGCGCTGCC CCTCACTGGG CACCTCTGTG CCCCACACAC TTCCTCCCCC TTTCATGGTT
  ACCTTGGGTA GTTGTCTCGG TAAATAAGTG                                 
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss320072193	CHEV_1_158369709	CHEVERUD	SCREENING_POP	f	SNP	C	T
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs233205235					SNP	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:156267148 () rs orientation: forward

Symbol	Name	Function Class
Rr31351	regulatory region 31351	1488 bp distal
Rr396421	regulatory region 396421	1963 bp downstream
Soat1	sterol O-acyltransferase 1	within coordinates
Tssr9565	transcription start site region 9565	117 bp upstream
Tssr14442	transcription start site region 14442	259 bp upstream
Tssr14443	transcription start site region 14443	1804 bp downstream
Tssr14444	transcription start site region 14444	1822 bp downstream